Variant report

Variant	rs10011682
Chromosome Location	chr4:160316374-160316375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10009743	1.00[AMR][1000 genomes]
rs10032214	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28462119	1.00[AMR][1000 genomes]
rs28641118	1.00[AFR][1000 genomes]
rs28704942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160303800-160321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:160312400-160317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:160312800-160321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160313000-160319000	Weak transcription	HUVEC	blood vessel
5	chr4:160313000-160319000	Weak transcription	NHLF	lung
6	chr4:160313000-160321800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:160313000-160322200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:160313200-160322000	Weak transcription	HMEC	breast
9	chr4:160316000-160318000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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