Variant report

Variant	rs28641118
Chromosome Location	chr4:160321695-160321696
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:160320966..160323361-chr4:160350586..160353397,2	K562	blood:
2	chr4:160320949..160323561-chr4:160326956..160329279,2	K562	blood:
3	chr4:160320145..160323561-chr4:160326463..160329279,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10011682	1.00[AFR][1000 genomes]
rs10032214	0.81[AFR][1000 genomes]
rs28704942	1.00[AFR][1000 genomes]
rs62337588	1.00[EUR][1000 genomes]
rs9995424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160313000-160321800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:160313000-160322200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:160313200-160322000	Weak transcription	HMEC	breast
4	chr4:160319200-160322200	Weak transcription	Psoas Muscle	Psoas
5	chr4:160319800-160321800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:160319800-160322000	Weak transcription	HSMM	muscle
7	chr4:160320000-160322000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:160320000-160322000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:160320000-160322000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:160320000-160322000	Weak transcription	NHLF	lung
11	chr4:160320000-160322200	Weak transcription	Adipose Nuclei	Adipose
12	chr4:160320000-160322400	Weak transcription	Osteobl	bone
13	chr4:160320200-160322000	Weak transcription	Right Atrium	heart
14	chr4:160320200-160322400	Weak transcription	Aorta	Aorta
15	chr4:160320200-160323000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:160320200-160323000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:160320400-160322200	Weak transcription	HUVEC	blood vessel
18	chr4:160321400-160321800	Enhancers	Brain Cingulate Gyrus	brain
19	chr4:160321400-160321800	Enhancers	Fetal Brain Female	brain
20	chr4:160321400-160322200	Enhancers	Fetal Stomach	stomach
21	chr4:160321400-160322600	Enhancers	GM12878-XiMat	blood
22	chr4:160321400-160323200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:160321400-160324600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:160321600-160321800	Enhancers	Primary hematopoietic stem cells	blood
25	chr4:160321600-160321800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:160321600-160321800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:160321600-160321800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr4:160321600-160321800	Enhancers	NHDF-Ad	bronchial
29	chr4:160321600-160322000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:160321600-160322000	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr4:160321600-160322000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:160321600-160322000	Enhancers	Brain Hippocampus Middle	brain
33	chr4:160321600-160322000	Enhancers	Fetal Muscle Leg	muscle
34	chr4:160321600-160322000	Enhancers	Ovary	ovary
35	chr4:160321600-160322000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:160321600-160322000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr4:160321600-160322200	Enhancers	Fetal Muscle Trunk	muscle
38	chr4:160321600-160322400	Weak transcription	Spleen	Spleen
39	chr4:160321600-160322600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:160321600-160322800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:160321600-160323200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:160321600-160323200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:160321600-160323200	Enhancers	Fetal Brain Male	brain
44	chr4:160321600-160323400	Enhancers	Left Ventricle	heart
45	chr4:160321600-160323600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr4:160321600-160323600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:160321600-160323600	Enhancers	Right Ventricle	heart
48	chr4:160321600-160323600	Enhancers	NHEK	skin
49	chr4:160321600-160324200	Enhancers	NH-A	brain

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