Variant report

Variant	rs10012514
Chromosome Location	chr4:96899948-96899949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11930270	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11939784	0.82[ASN][1000 genomes]
rs11944583	0.80[ASN][1000 genomes]
rs11945990	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17024835	1.00[EUR][1000 genomes]
rs17024857	1.00[EUR][1000 genomes]
rs17024945	0.80[ASN][1000 genomes]
rs28783671	0.82[ASN][1000 genomes]
rs57028867	1.00[EUR][1000 genomes]
rs58686513	1.00[EUR][1000 genomes]
rs61056770	1.00[EUR][1000 genomes]
rs6849040	1.00[EUR][1000 genomes]
rs72874509	1.00[EUR][1000 genomes]
rs72891311	1.00[EUR][1000 genomes]
rs72891325	1.00[EUR][1000 genomes]
rs72891351	1.00[EUR][1000 genomes]
rs72891359	1.00[EUR][1000 genomes]
rs72891360	1.00[EUR][1000 genomes]
rs73840289	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96895400-96903000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:96899000-96900400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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