Variant report

Variant	rs11945990
Chromosome Location	chr4:96880845-96880846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10012514	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11930270	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944583	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17024835	1.00[EUR][1000 genomes]
rs17024857	1.00[EUR][1000 genomes]
rs17024945	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17024949	0.83[ASN][1000 genomes]
rs57028867	1.00[EUR][1000 genomes]
rs58686513	1.00[EUR][1000 genomes]
rs61056770	1.00[EUR][1000 genomes]
rs6849040	1.00[EUR][1000 genomes]
rs72874509	1.00[EUR][1000 genomes]
rs72891311	1.00[EUR][1000 genomes]
rs72891325	1.00[EUR][1000 genomes]
rs72891351	1.00[EUR][1000 genomes]
rs72891359	1.00[EUR][1000 genomes]
rs72891360	1.00[EUR][1000 genomes]
rs73840289	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96878200-96881200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:96878800-96884400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:96879200-96884200	Weak transcription	HMEC	breast
4	chr4:96880800-96881200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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