Variant report

Variant	rs17024949
Chromosome Location	chr4:96885307-96885308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11930270	0.83[ASN][1000 genomes]
rs11939784	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11944583	0.83[ASN][1000 genomes]
rs11945990	0.83[ASN][1000 genomes]
rs17024945	0.83[ASN][1000 genomes]
rs28783671	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61385572	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96884200-96886000	Enhancers	HMEC	breast
2	chr4:96884400-96885800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:96884600-96885600	Enhancers	NHEK	skin
4	chr4:96884600-96885800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:96884800-96887000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:96885200-96885600	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links