Variant report

Variant	rs10012583
Chromosome Location	chr4:15399754-15399755
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11735738	0.81[EUR][1000 genomes]
rs13108125	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13131227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698109	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs719993	0.89[ASN][1000 genomes]
rs9990934	0.88[ASN][1000 genomes]
rs9992835	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388200-15400000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
5	chr4:15394200-15400000	Weak transcription	Lung	lung
6	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
7	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:15397000-15402200	Weak transcription	Right Atrium	heart
9	chr4:15397600-15399800	Weak transcription	Osteobl	bone
10	chr4:15397600-15400600	Weak transcription	Fetal Kidney	kidney
11	chr4:15398000-15399800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:15398000-15400000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:15398000-15400400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:15398000-15401400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:15398000-15402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr4:15398200-15401800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:15398400-15400000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:15398400-15400200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:15398400-15400200	Weak transcription	Adipose Nuclei	Adipose
20	chr4:15399000-15400000	Weak transcription	Esophagus	oesophagus
21	chr4:15399000-15400200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:15399000-15400400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:15399000-15402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:15399000-15402400	Enhancers	Hela-S3	cervix
25	chr4:15399000-15405200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr4:15399200-15400000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr4:15399200-15401200	Enhancers	HMEC	breast
28	chr4:15399200-15402400	Enhancers	NHEK	skin
29	chr4:15399400-15400200	Enhancers	NHDF-Ad	bronchial
30	chr4:15399400-15400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:15399400-15400400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr4:15399400-15400800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:15399600-15399800	Enhancers	Ovary	ovary
34	chr4:15399600-15400200	Enhancers	NHLF	lung
35	chr4:15399600-15400800	Enhancers	Aorta	Aorta
36	chr4:15399600-15402200	Enhancers	Stomach Smooth Muscle	stomach

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