Variant report

Variant	rs13131227
Chromosome Location	chr4:15421953-15421954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10012583	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048037	0.84[CHD][hapmap]
rs11735738	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs13108125	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13116208	0.81[CEU][hapmap]
rs2192356	0.81[CEU][hapmap];0.80[GIH][hapmap];0.82[EUR][1000 genomes]
rs4698109	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs719993	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9990934	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9992835	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13131227	FAM200B	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15405400-15422000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:15416800-15422000	Weak transcription	Brain Substantia Nigra	brain
3	chr4:15416800-15422000	Weak transcription	HSMMtube	muscle
4	chr4:15416800-15422000	Weak transcription	NH-A	brain
5	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
6	chr4:15418000-15423200	Enhancers	Ovary	ovary
7	chr4:15418200-15423200	Enhancers	Colon Smooth Muscle	Colon
8	chr4:15418400-15422600	Weak transcription	Right Atrium	heart
9	chr4:15419000-15422000	Enhancers	Aorta	Aorta
10	chr4:15419000-15428600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:15419800-15428600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:15420000-15422800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:15420800-15428800	Weak transcription	Fetal Stomach	stomach
14	chr4:15421400-15423800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:15421600-15422600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:15421600-15423200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:15421800-15422000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:15421800-15422400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:15421800-15422600	Enhancers	NHLF	lung
20	chr4:15421800-15422800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:15421800-15422800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:15421800-15422800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:15421800-15422800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:15421800-15422800	Enhancers	Osteobl	bone
25	chr4:15421800-15423000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:15421800-15423000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:15421800-15423000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:15421800-15423000	Enhancers	Brain Anterior Caudate	brain
29	chr4:15421800-15423000	Enhancers	HSMM	muscle
30	chr4:15421800-15423200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr4:15421800-15423200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:15421800-15423200	Enhancers	Brain Cingulate Gyrus	brain
33	chr4:15421800-15423200	Enhancers	Brain Hippocampus Middle	brain
34	chr4:15421800-15423200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr4:15421800-15423200	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links