Variant report

Variant	rs1048037
Chromosome Location	chr4:15447445-15447446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15293753..15295932-chr4:15446346..15448128,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10002931	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10003338	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10032941	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10212844	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10212901	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10213628	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1024758	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs1024759	0.80[EUR][1000 genomes]
rs10461112	0.83[EUR][1000 genomes]
rs11934015	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11937671	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13104095	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs13106702	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13120744	0.83[EUR][1000 genomes]
rs13123785	0.81[CEU][hapmap]
rs13124324	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13129124	0.80[EUR][1000 genomes]
rs13131227	0.84[CHD][hapmap]
rs13132604	0.84[CEU][hapmap]
rs16891939	0.80[EUR][1000 genomes]
rs17469724	0.83[EUR][1000 genomes]
rs2160043	0.84[JPT][hapmap]
rs2160046	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2192363	0.91[ASN][1000 genomes]
rs2192364	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2215810	0.91[ASN][1000 genomes]
rs28376639	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28561808	0.83[EUR][1000 genomes]
rs2872704	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34400909	0.83[EUR][1000 genomes]
rs35539860	0.84[EUR][1000 genomes]
rs3797006	0.81[CEU][hapmap]
rs3822296	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4140932	0.92[ASN][1000 genomes]
rs6449138	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68012715	0.84[EUR][1000 genomes]
rs6828721	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6855244	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71601477	0.83[EUR][1000 genomes]
rs7661287	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7681816	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7687272	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7690471	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7697778	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs973629	0.91[ASN][1000 genomes]
rs9991652	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438200-15452400	Weak transcription	Left Ventricle	heart
2	chr4:15438200-15452600	Weak transcription	Fetal Kidney	kidney
3	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:15438800-15453000	Weak transcription	Fetal Lung	lung
5	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:15443800-15452000	Weak transcription	Primary B cells from cord blood	blood
7	chr4:15444200-15452400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:15444400-15452400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:15444400-15452400	Weak transcription	Fetal Stomach	stomach
10	chr4:15445600-15452200	Weak transcription	Aorta	Aorta
11	chr4:15446200-15452400	Weak transcription	Ovary	ovary
12	chr4:15446400-15447600	Enhancers	Primary hematopoietic stem cells	blood
13	chr4:15446600-15452400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:15446800-15448000	Weak transcription	Primary T cells from cord blood	blood
15	chr4:15447000-15451800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:15447000-15452400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:15447000-15452400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:15447200-15447800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:15447200-15452000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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