Variant report

Variant	rs2215810
Chromosome Location	chr4:15458425-15458426
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10002931	0.85[ASN][1000 genomes]
rs10003338	0.85[ASN][1000 genomes]
rs10032941	0.85[ASN][1000 genomes]
rs10212844	0.84[ASN][1000 genomes]
rs10212901	0.85[ASN][1000 genomes]
rs10213628	0.85[ASN][1000 genomes]
rs1048037	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs11934015	0.85[ASN][1000 genomes]
rs11937671	0.85[ASN][1000 genomes]
rs13106702	0.85[ASN][1000 genomes]
rs13124324	0.85[ASN][1000 genomes]
rs13131227	0.83[JPT][hapmap]
rs13138554	0.84[EUR][1000 genomes]
rs2160043	0.81[CEU][hapmap]
rs2160046	0.94[ASN][1000 genomes]
rs2192363	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192364	0.85[ASN][1000 genomes]
rs28376639	0.85[ASN][1000 genomes]
rs2872704	0.85[ASN][1000 genomes]
rs34496443	0.85[EUR][1000 genomes]
rs35301498	0.85[EUR][1000 genomes]
rs35465107	0.85[EUR][1000 genomes]
rs3822296	0.85[ASN][1000 genomes]
rs4140932	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58479200	0.85[EUR][1000 genomes]
rs6449138	0.85[ASN][1000 genomes]
rs6828721	0.85[ASN][1000 genomes]
rs6855244	0.84[ASN][1000 genomes]
rs719993	0.83[JPT][hapmap];0.83[YRI][hapmap]
rs722235	0.85[EUR][1000 genomes]
rs7661287	0.94[ASN][1000 genomes]
rs7681816	0.83[ASN][1000 genomes]
rs7687272	0.85[ASN][1000 genomes]
rs7690471	0.85[ASN][1000 genomes]
rs7697778	0.85[ASN][1000 genomes]
rs973629	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9990934	0.83[JPT][hapmap]
rs9991652	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:15448400-15458800	Weak transcription	Primary T cells from cord blood	blood
4	chr4:15453000-15458800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:15453400-15458600	Weak transcription	Left Ventricle	heart
6	chr4:15453600-15458600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:15453600-15459000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:15453600-15459000	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:15453800-15458600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:15454000-15458800	Weak transcription	Fetal Lung	lung
11	chr4:15454200-15458600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:15454200-15458600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:15454200-15458800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:15454200-15458800	Weak transcription	Stomach Mucosa	stomach
15	chr4:15454200-15459000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:15454400-15458800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:15454400-15458800	Weak transcription	Colon Smooth Muscle	Colon
18	chr4:15454600-15458600	Weak transcription	Fetal Stomach	stomach
19	chr4:15454800-15459000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:15454800-15459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:15456200-15459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:15456200-15459800	Enhancers	NHLF	lung
23	chr4:15456400-15458800	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr4:15456400-15459800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr4:15457200-15458600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:15457200-15458600	Weak transcription	Right Atrium	heart
27	chr4:15457200-15458800	Weak transcription	HSMM	muscle
28	chr4:15457400-15458800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:15457400-15459000	Weak transcription	Brain Substantia Nigra	brain
30	chr4:15457600-15458600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:15457600-15458600	Weak transcription	Placenta	Placenta
32	chr4:15457600-15458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:15457600-15458800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:15457600-15458800	Weak transcription	Liver	Liver
35	chr4:15457600-15458800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr4:15457600-15458800	Weak transcription	NHDF-Ad	bronchial
37	chr4:15457600-15458800	Weak transcription	Osteobl	bone
38	chr4:15457600-15459000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr4:15457800-15458800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:15457800-15458800	Weak transcription	Adipose Nuclei	Adipose
41	chr4:15458000-15459600	Enhancers	Aorta	Aorta
42	chr4:15458200-15459600	Enhancers	Primary hematopoietic stem cells	blood
43	chr4:15458200-15459800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:15458200-15459800	Enhancers	Ovary	ovary
45	chr4:15458400-15458800	Enhancers	Primary B cells from cord blood	blood
46	chr4:15458400-15459000	Enhancers	Stomach Smooth Muscle	stomach
47	chr4:15458400-15459200	Enhancers	Spleen	Spleen
48	chr4:15458400-15459400	Enhancers	Fetal Brain Female	brain
49	chr4:15458400-15459600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr4:15458400-15459800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links