Variant report

Variant	rs7690471
Chromosome Location	chr4:15401939-15401940
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15401621..15404342-chr4:15426041..15427712,2	MCF-7	breast:
2	chr4:15396902..15399752-chr4:15401577..15403886,2	K562	blood:
3	chr4:15400431..15401971-chr4:15403659..15405343,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10002931	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10003338	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212844	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10212901	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213628	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024758	0.81[CEU][hapmap]
rs1048037	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10488970	0.84[EUR][1000 genomes]
rs11934015	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937671	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233742	0.85[EUR][1000 genomes]
rs13106702	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114788	0.85[EUR][1000 genomes]
rs13124324	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124984	0.84[EUR][1000 genomes]
rs13132007	0.85[EUR][1000 genomes]
rs13132446	0.85[EUR][1000 genomes]
rs13132604	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs13138481	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs16891929	0.82[EUR][1000 genomes]
rs16891934	0.82[EUR][1000 genomes]
rs1990524	0.84[EUR][1000 genomes]
rs2160043	0.84[JPT][hapmap]
rs2160046	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2192355	0.84[EUR][1000 genomes]
rs2192363	0.85[ASN][1000 genomes]
rs2192364	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215810	0.85[ASN][1000 genomes]
rs28376639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2872704	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34028526	0.85[EUR][1000 genomes]
rs34351987	0.85[EUR][1000 genomes]
rs34352292	0.85[EUR][1000 genomes]
rs35866305	0.85[EUR][1000 genomes]
rs35971217	0.85[EUR][1000 genomes]
rs3797006	0.82[CEU][hapmap]
rs3822296	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140932	0.86[ASN][1000 genomes]
rs59684117	0.85[EUR][1000 genomes]
rs61240629	0.85[EUR][1000 genomes]
rs62289285	0.85[EUR][1000 genomes]
rs6449138	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855244	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71601473	0.84[EUR][1000 genomes]
rs7442554	0.84[EUR][1000 genomes]
rs7661287	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7681816	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687272	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697778	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973629	0.85[ASN][1000 genomes]
rs9991652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
2	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:15397000-15402200	Weak transcription	Right Atrium	heart
4	chr4:15398000-15402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:15399000-15402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:15399000-15402400	Enhancers	Hela-S3	cervix
7	chr4:15399000-15405200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:15399200-15402400	Enhancers	NHEK	skin
9	chr4:15399600-15402200	Enhancers	Stomach Smooth Muscle	stomach
10	chr4:15400000-15402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:15400000-15402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:15400000-15402800	Enhancers	Colon Smooth Muscle	Colon
13	chr4:15400000-15405400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr4:15400200-15402000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:15400200-15402000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:15400200-15402000	Weak transcription	NHDF-Ad	bronchial
17	chr4:15400200-15402200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:15400200-15402800	Enhancers	Primary T cells from cord blood	blood
19	chr4:15400200-15403200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:15400200-15403200	Enhancers	Ovary	ovary
21	chr4:15400200-15403400	Enhancers	Primary B cells from peripheral blood	blood
22	chr4:15400200-15405000	Enhancers	Primary hematopoietic stem cells	blood
23	chr4:15400400-15402200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:15400400-15402600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr4:15400400-15403600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr4:15400600-15402400	Weak transcription	Lung	lung
27	chr4:15400600-15403600	Enhancers	Fetal Kidney	kidney
28	chr4:15400800-15402000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr4:15400800-15402000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:15400800-15402000	Weak transcription	Aorta	Aorta
31	chr4:15400800-15402200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:15400800-15402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:15400800-15402400	Weak transcription	Spleen	Spleen
34	chr4:15401000-15402000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr4:15401000-15402200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr4:15401000-15402200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:15401000-15402200	Weak transcription	Esophagus	oesophagus
38	chr4:15401200-15402400	Enhancers	Primary B cells from cord blood	blood
39	chr4:15401200-15405400	Enhancers	Rectal Smooth Muscle	rectum
40	chr4:15401400-15402200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:15401400-15402200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:15401400-15402800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:15401400-15402800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:15401400-15405200	Enhancers	NHLF	lung
45	chr4:15401600-15402000	Enhancers	Dnd41	blood
46	chr4:15401600-15402200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr4:15401600-15402400	Enhancers	Osteobl	bone
48	chr4:15401600-15402600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr4:15401600-15403000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr4:15401600-15404000	Enhancers	HMEC	breast

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