Variant report

Variant	rs16891934
Chromosome Location	chr4:15426543-15426544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF3	chr4:15426505-15426561	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15401621..15404342-chr4:15426041..15427712,2	MCF-7	breast:

Variant related genes	Relation type
C1QTNF7	TF binding region
ENSG00000251379	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10002931	0.82[EUR][1000 genomes]
rs10003338	0.83[EUR][1000 genomes]
rs10032941	0.80[EUR][1000 genomes]
rs10212844	0.82[EUR][1000 genomes]
rs10212901	0.81[EUR][1000 genomes]
rs10213628	0.82[EUR][1000 genomes]
rs1024758	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1024759	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10461112	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10488970	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934015	0.82[EUR][1000 genomes]
rs11937671	0.82[EUR][1000 genomes]
rs12233742	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104095	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13106702	0.83[EUR][1000 genomes]
rs13114788	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120744	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13123050	0.90[ASN][1000 genomes]
rs13123785	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13124324	0.82[EUR][1000 genomes]
rs13124984	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13129124	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13132007	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13132446	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13132604	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138481	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138554	0.88[ASN][1000 genomes]
rs16891929	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891939	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16891945	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17469724	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1990524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192364	0.82[EUR][1000 genomes]
rs28376639	0.82[EUR][1000 genomes]
rs28561808	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2872704	0.82[EUR][1000 genomes]
rs34028526	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34351987	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34352292	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34400909	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34496443	0.90[ASN][1000 genomes]
rs35301498	0.90[ASN][1000 genomes]
rs35465107	0.88[ASN][1000 genomes]
rs35539860	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35866305	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971217	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3797006	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3822296	0.81[EUR][1000 genomes]
rs58479200	0.90[ASN][1000 genomes]
rs59684117	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61240629	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62289285	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449138	0.82[EUR][1000 genomes]
rs66696244	0.89[ASN][1000 genomes]
rs67391897	0.90[ASN][1000 genomes]
rs68012715	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6828721	0.82[EUR][1000 genomes]
rs6855244	0.82[EUR][1000 genomes]
rs71601473	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71601477	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs722235	0.88[ASN][1000 genomes]
rs7442554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681816	0.82[EUR][1000 genomes]
rs7687272	0.82[EUR][1000 genomes]
rs7690471	0.82[EUR][1000 genomes]
rs7697778	0.82[EUR][1000 genomes]
rs9991652	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
2	chr4:15419000-15428600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:15419800-15428600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:15420800-15428800	Weak transcription	Fetal Stomach	stomach
5	chr4:15423000-15428400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:15423200-15428400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:15423200-15428600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:15423200-15429000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:15423200-15429000	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:15424800-15426600	Enhancers	Aorta	Aorta
11	chr4:15425200-15428000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:15425200-15428000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:15425200-15428000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:15425400-15428800	Enhancers	NHEK	skin
15	chr4:15425800-15427200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:15426000-15427200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:15426000-15428000	Enhancers	HMEC	breast
18	chr4:15426200-15427000	Weak transcription	Spleen	Spleen
19	chr4:15426200-15428400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:15426400-15427200	Weak transcription	Ovary	ovary

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