Variant report

Variant	rs34351987
Chromosome Location	chr4:15404950-15404951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15400431..15401971-chr4:15403659..15405343,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10002931	0.84[EUR][1000 genomes]
rs10003338	0.85[EUR][1000 genomes]
rs10032941	0.83[EUR][1000 genomes]
rs10212844	0.85[EUR][1000 genomes]
rs10212901	0.84[EUR][1000 genomes]
rs10213628	0.85[EUR][1000 genomes]
rs1024758	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1024759	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10461112	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10488970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11934015	0.84[EUR][1000 genomes]
rs11937671	0.85[EUR][1000 genomes]
rs12233742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13104095	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13106702	0.85[EUR][1000 genomes]
rs13114788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13120744	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13123050	0.89[ASN][1000 genomes]
rs13123785	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13124324	0.85[EUR][1000 genomes]
rs13124984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13129124	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13132007	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132446	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13132604	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13138481	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13138554	0.88[ASN][1000 genomes]
rs16891929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16891934	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16891939	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16891945	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17469724	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1990524	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192355	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192364	0.85[EUR][1000 genomes]
rs28376639	0.85[EUR][1000 genomes]
rs28561808	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2872704	0.85[EUR][1000 genomes]
rs34028526	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34352292	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34400909	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34496443	0.89[ASN][1000 genomes]
rs35301498	0.89[ASN][1000 genomes]
rs35465107	0.87[ASN][1000 genomes]
rs35539860	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35866305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35971217	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3797006	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3822296	0.84[EUR][1000 genomes]
rs58479200	0.89[ASN][1000 genomes]
rs59684117	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61240629	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62289285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6449138	0.85[EUR][1000 genomes]
rs66696244	0.88[ASN][1000 genomes]
rs67391897	0.90[ASN][1000 genomes]
rs68012715	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6828721	0.85[EUR][1000 genomes]
rs6855244	0.85[EUR][1000 genomes]
rs71601473	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71601477	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs722235	0.87[ASN][1000 genomes]
rs7442554	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7681816	0.84[EUR][1000 genomes]
rs7687272	0.85[EUR][1000 genomes]
rs7690471	0.85[EUR][1000 genomes]
rs7697778	0.85[EUR][1000 genomes]
rs9991652	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15399000-15405200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:15400000-15405400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:15400200-15405000	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:15401200-15405400	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:15401400-15405200	Enhancers	NHLF	lung
6	chr4:15401600-15405000	Enhancers	HSMMtube	muscle
7	chr4:15401600-15405200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:15402000-15406200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:15402200-15405000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr4:15402200-15405400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:15402600-15405200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:15402600-15405200	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:15403000-15405000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:15403000-15405200	Enhancers	NHDF-Ad	bronchial
15	chr4:15403200-15405200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr4:15403200-15405200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:15403200-15405200	Enhancers	Colon Smooth Muscle	Colon
18	chr4:15403200-15405400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:15403200-15405400	Enhancers	Osteobl	bone
20	chr4:15403200-15406800	Weak transcription	Left Ventricle	heart
21	chr4:15403200-15406800	Weak transcription	Lung	lung
22	chr4:15403200-15406800	Weak transcription	Right Ventricle	heart
23	chr4:15403200-15407000	Weak transcription	Spleen	Spleen
24	chr4:15403200-15407600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:15403200-15411200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:15403200-15411200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr4:15403200-15412400	Weak transcription	Thymus	Thymus
28	chr4:15403400-15405400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr4:15403400-15405400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr4:15403600-15405200	Enhancers	Primary B cells from cord blood	blood
31	chr4:15403600-15405200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr4:15403600-15405400	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr4:15403600-15406600	Enhancers	Primary T cells from cord blood	blood
34	chr4:15403600-15411200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:15403800-15411600	Weak transcription	Fetal Thymus	thymus
36	chr4:15404000-15405000	Weak transcription	Fetal Stomach	stomach
37	chr4:15404000-15405400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr4:15404000-15406200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr4:15404000-15406200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:15404000-15406400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr4:15404000-15411400	Weak transcription	Fetal Lung	lung
42	chr4:15404000-15414800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:15404000-15415600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:15404200-15411400	Weak transcription	Dnd41	blood
45	chr4:15404400-15407000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:15404600-15405400	Enhancers	Aorta	Aorta
47	chr4:15404600-15406200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:15404800-15405000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr4:15404800-15405000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:15404800-15405000	Enhancers	Fetal Heart	heart

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