Variant report

Variant	rs67391897
Chromosome Location	chr4:15458253-15458254
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1024758	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1024759	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10461112	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10488970	0.90[ASN][1000 genomes]
rs12233742	0.90[ASN][1000 genomes]
rs13104095	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13114788	0.90[ASN][1000 genomes]
rs13120744	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13123050	0.99[ASN][1000 genomes]
rs13123785	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13124984	0.90[ASN][1000 genomes]
rs13129124	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13132007	0.90[ASN][1000 genomes]
rs13132446	0.89[ASN][1000 genomes]
rs13132604	0.90[ASN][1000 genomes]
rs13138481	0.90[ASN][1000 genomes]
rs13138554	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16891929	0.90[ASN][1000 genomes]
rs16891934	0.90[ASN][1000 genomes]
rs16891939	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16891945	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17469724	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1990524	0.90[ASN][1000 genomes]
rs2192355	0.90[ASN][1000 genomes]
rs28561808	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34028526	0.90[ASN][1000 genomes]
rs34351987	0.90[ASN][1000 genomes]
rs34352292	0.90[ASN][1000 genomes]
rs34400909	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34496443	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35301498	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35465107	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35539860	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35866305	0.90[ASN][1000 genomes]
rs35971217	0.90[ASN][1000 genomes]
rs3797006	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58479200	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59684117	0.90[ASN][1000 genomes]
rs61240629	0.90[ASN][1000 genomes]
rs62289285	0.90[ASN][1000 genomes]
rs66696244	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68012715	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71601473	0.90[ASN][1000 genomes]
rs71601477	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs722235	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7442554	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438400-15458800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:15448400-15458800	Weak transcription	Primary T cells from cord blood	blood
4	chr4:15453000-15458800	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:15453400-15458400	Weak transcription	Primary B cells from cord blood	blood
6	chr4:15453400-15458600	Weak transcription	Left Ventricle	heart
7	chr4:15453600-15458400	Weak transcription	Spleen	Spleen
8	chr4:15453600-15458600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:15453600-15459000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:15453600-15459000	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:15453800-15458600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:15454000-15458400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:15454000-15458800	Weak transcription	Fetal Lung	lung
14	chr4:15454200-15458600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:15454200-15458600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:15454200-15458800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:15454200-15458800	Weak transcription	Stomach Mucosa	stomach
18	chr4:15454200-15459000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:15454400-15458800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:15454400-15458800	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:15454600-15458600	Weak transcription	Fetal Stomach	stomach
22	chr4:15454800-15459000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:15454800-15459000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:15456200-15459600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:15456200-15459800	Enhancers	NHLF	lung
26	chr4:15456400-15458800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr4:15456400-15459800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:15457200-15458600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:15457200-15458600	Weak transcription	Right Atrium	heart
30	chr4:15457200-15458800	Weak transcription	HSMM	muscle
31	chr4:15457400-15458800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:15457400-15459000	Weak transcription	Brain Substantia Nigra	brain
33	chr4:15457600-15458400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:15457600-15458600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:15457600-15458600	Weak transcription	Placenta	Placenta
36	chr4:15457600-15458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:15457600-15458800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:15457600-15458800	Weak transcription	Liver	Liver
39	chr4:15457600-15458800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr4:15457600-15458800	Weak transcription	NHDF-Ad	bronchial
41	chr4:15457600-15458800	Weak transcription	Osteobl	bone
42	chr4:15457600-15459000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:15457800-15458400	Weak transcription	Fetal Brain Female	brain
44	chr4:15457800-15458800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:15457800-15458800	Weak transcription	Adipose Nuclei	Adipose
46	chr4:15458000-15459600	Enhancers	Aorta	Aorta
47	chr4:15458200-15459600	Enhancers	Primary hematopoietic stem cells	blood
48	chr4:15458200-15459800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:15458200-15459800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links