Variant report

Variant	rs58479200
Chromosome Location	chr4:15461802-15461803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1024758	0.92[ASN][1000 genomes]
rs1024759	0.92[ASN][1000 genomes]
rs10461112	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10488970	0.90[ASN][1000 genomes]
rs12233742	0.90[ASN][1000 genomes]
rs13104095	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13114788	0.90[ASN][1000 genomes]
rs13120744	0.89[ASN][1000 genomes]
rs13123050	1.00[ASN][1000 genomes]
rs13123785	0.92[ASN][1000 genomes]
rs13124984	0.90[ASN][1000 genomes]
rs13129124	0.92[ASN][1000 genomes]
rs13132007	0.89[ASN][1000 genomes]
rs13132446	0.88[ASN][1000 genomes]
rs13132604	0.90[ASN][1000 genomes]
rs13138481	0.90[ASN][1000 genomes]
rs13138554	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16891929	0.90[ASN][1000 genomes]
rs16891934	0.90[ASN][1000 genomes]
rs16891939	0.92[ASN][1000 genomes]
rs16891945	0.91[ASN][1000 genomes]
rs17469724	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1990524	0.90[ASN][1000 genomes]
rs2192355	0.90[ASN][1000 genomes]
rs2192363	0.85[EUR][1000 genomes]
rs2215810	0.85[EUR][1000 genomes]
rs28561808	0.94[ASN][1000 genomes]
rs34028526	0.90[ASN][1000 genomes]
rs34351987	0.89[ASN][1000 genomes]
rs34352292	0.89[ASN][1000 genomes]
rs34400909	0.92[ASN][1000 genomes]
rs34496443	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35301498	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35465107	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35539860	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35866305	0.90[ASN][1000 genomes]
rs35971217	0.89[ASN][1000 genomes]
rs3797006	0.92[ASN][1000 genomes]
rs4140932	0.85[EUR][1000 genomes]
rs59684117	0.89[ASN][1000 genomes]
rs61240629	0.89[ASN][1000 genomes]
rs62289285	0.90[ASN][1000 genomes]
rs66696244	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67391897	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68012715	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs71601473	0.90[ASN][1000 genomes]
rs71601477	0.92[ASN][1000 genomes]
rs722235	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7442554	0.90[ASN][1000 genomes]
rs973629	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv2760903	chr4:15458598-15464619	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15438800-15471200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:15459400-15462000	Enhancers	Stomach Smooth Muscle	stomach
3	chr4:15459600-15470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:15459800-15462600	Weak transcription	Ovary	ovary
5	chr4:15460600-15462000	Enhancers	Aorta	Aorta
6	chr4:15460800-15462200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:15461200-15462000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:15461600-15462200	Bivalent Enhancer	NHDF-Ad	bronchial

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