Variant report

Variant	rs10003338
Chromosome Location	chr4:15397178-15397179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15396902..15399752-chr4:15401577..15403886,2	K562	blood:
2	chr4:15329709..15330339-chr4:15397138..15397947,2	MCF-7	breast:
3	chr4:15386891..15389601-chr4:15395549..15397973,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10002931	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10032941	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212844	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10212901	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213628	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024758	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs1024759	0.80[EUR][1000 genomes]
rs1048037	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10488970	0.85[EUR][1000 genomes]
rs11934015	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937671	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233742	0.85[EUR][1000 genomes]
rs13106702	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114788	0.85[EUR][1000 genomes]
rs13124324	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124984	0.84[EUR][1000 genomes]
rs13129124	0.80[EUR][1000 genomes]
rs13132007	0.85[EUR][1000 genomes]
rs13132446	0.85[EUR][1000 genomes]
rs13132604	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs13138481	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs16891929	0.83[EUR][1000 genomes]
rs16891934	0.83[EUR][1000 genomes]
rs16891939	0.80[EUR][1000 genomes]
rs1990524	0.85[EUR][1000 genomes]
rs2160043	0.84[JPT][hapmap]
rs2160046	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2192355	0.85[EUR][1000 genomes]
rs2192363	0.85[ASN][1000 genomes]
rs2192364	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215810	0.85[ASN][1000 genomes]
rs28376639	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2872704	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34028526	0.85[EUR][1000 genomes]
rs34351987	0.85[EUR][1000 genomes]
rs34352292	0.85[EUR][1000 genomes]
rs35866305	0.85[EUR][1000 genomes]
rs35971217	0.85[EUR][1000 genomes]
rs3797006	0.82[CEU][hapmap]
rs3822296	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140932	0.86[ASN][1000 genomes]
rs59684117	0.85[EUR][1000 genomes]
rs61240629	0.85[EUR][1000 genomes]
rs62289285	0.85[EUR][1000 genomes]
rs6449138	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828721	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855244	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71601473	0.85[EUR][1000 genomes]
rs7442554	0.84[EUR][1000 genomes]
rs7661287	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7681816	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687272	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690471	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697778	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973629	0.85[ASN][1000 genomes]
rs9991652	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388200-15400000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
5	chr4:15394200-15397600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:15394200-15397800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:15394200-15400000	Weak transcription	Lung	lung
8	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
9	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:15396000-15397800	Weak transcription	Aorta	Aorta
11	chr4:15396000-15398000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:15396600-15397600	Enhancers	Ovary	ovary
13	chr4:15396800-15397600	Enhancers	Osteobl	bone
14	chr4:15396800-15398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:15396800-15398000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:15396800-15398000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:15397000-15397600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:15397000-15402200	Weak transcription	Right Atrium	heart

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