Variant report

Variant	rs6855244
Chromosome Location	chr4:15402918-15402919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15401621..15404342-chr4:15426041..15427712,2	MCF-7	breast:
2	chr4:15396902..15399752-chr4:15401577..15403886,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10002931	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10003338	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10032941	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10212844	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10212901	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10213628	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1024758	0.81[CEU][hapmap]
rs1048037	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10488970	0.84[EUR][1000 genomes]
rs11934015	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11937671	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12233742	0.85[EUR][1000 genomes]
rs13106702	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13114788	0.85[EUR][1000 genomes]
rs13124324	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13124984	0.84[EUR][1000 genomes]
rs13132007	0.85[EUR][1000 genomes]
rs13132446	0.85[EUR][1000 genomes]
rs13132604	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs13138481	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs16891929	0.82[EUR][1000 genomes]
rs16891934	0.82[EUR][1000 genomes]
rs1990524	0.84[EUR][1000 genomes]
rs2160043	0.84[JPT][hapmap]
rs2160046	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192355	0.84[EUR][1000 genomes]
rs2192363	0.84[ASN][1000 genomes]
rs2192364	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215810	0.84[ASN][1000 genomes]
rs28376639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2872704	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34028526	0.85[EUR][1000 genomes]
rs34351987	0.85[EUR][1000 genomes]
rs34352292	0.85[EUR][1000 genomes]
rs35866305	0.85[EUR][1000 genomes]
rs35971217	0.85[EUR][1000 genomes]
rs3797006	0.82[CEU][hapmap]
rs3822296	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4140932	0.85[ASN][1000 genomes]
rs59684117	0.85[EUR][1000 genomes]
rs61240629	0.85[EUR][1000 genomes]
rs62289285	0.85[EUR][1000 genomes]
rs6449138	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6828721	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71601473	0.84[EUR][1000 genomes]
rs7442554	0.84[EUR][1000 genomes]
rs7661287	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7681816	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687272	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7690471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7697778	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs973629	0.84[ASN][1000 genomes]
rs9991652	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15399000-15405200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:15400000-15405400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:15400200-15403200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:15400200-15403200	Enhancers	Ovary	ovary
5	chr4:15400200-15403400	Enhancers	Primary B cells from peripheral blood	blood
6	chr4:15400200-15405000	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:15400400-15403600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr4:15400600-15403600	Enhancers	Fetal Kidney	kidney
9	chr4:15401200-15405400	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:15401400-15405200	Enhancers	NHLF	lung
11	chr4:15401600-15403000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:15401600-15404000	Enhancers	HMEC	breast
13	chr4:15401600-15404200	Enhancers	HSMM	muscle
14	chr4:15401600-15405000	Enhancers	HSMMtube	muscle
15	chr4:15401600-15405200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:15401800-15403200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:15401800-15403200	Enhancers	Placenta	Placenta
18	chr4:15401800-15404000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:15401800-15404000	Enhancers	Fetal Stomach	stomach
20	chr4:15401800-15404800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:15402000-15403000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr4:15402000-15403400	Flanking Active TSS	Dnd41	blood
23	chr4:15402000-15403800	Enhancers	Fetal Thymus	thymus
24	chr4:15402000-15404000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr4:15402000-15404000	Enhancers	Fetal Lung	lung
26	chr4:15402000-15404200	Enhancers	Aorta	Aorta
27	chr4:15402000-15406200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:15402200-15403000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:15402200-15403000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:15402200-15403000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:15402200-15403000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:15402200-15403000	Enhancers	Right Atrium	heart
33	chr4:15402200-15403000	Enhancers	NH-A	brain
34	chr4:15402200-15403200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr4:15402200-15403200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:15402200-15403200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr4:15402200-15403200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr4:15402200-15403200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:15402200-15403200	Enhancers	Esophagus	oesophagus
40	chr4:15402200-15403200	Enhancers	Right Ventricle	heart
41	chr4:15402200-15403200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr4:15402200-15403200	Enhancers	Small Intestine	intestine
43	chr4:15402200-15403200	Enhancers	Thymus	Thymus
44	chr4:15402200-15403600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr4:15402200-15403800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:15402200-15404000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:15402200-15404200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr4:15402200-15404200	Enhancers	Fetal Heart	heart
49	chr4:15402200-15404600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:15402200-15405000	Enhancers	Duodenum Smooth Muscle	Duodenum

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