Variant report

Variant	rs2192364
Chromosome Location	chr4:15400927-15400928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15232990..15233674-chr4:15400529..15401322,2	MCF-7	breast:
2	chr4:15400431..15401971-chr4:15403659..15405343,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10002931	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10003338	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10032941	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212844	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10212901	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213628	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048037	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10488970	0.84[EUR][1000 genomes]
rs11934015	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937671	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233742	0.85[EUR][1000 genomes]
rs13106702	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114788	0.85[EUR][1000 genomes]
rs13124324	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124984	0.84[EUR][1000 genomes]
rs13132007	0.85[EUR][1000 genomes]
rs13132446	0.85[EUR][1000 genomes]
rs13132604	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs13138481	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs16891929	0.82[EUR][1000 genomes]
rs16891934	0.82[EUR][1000 genomes]
rs1990524	0.84[EUR][1000 genomes]
rs2160046	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2192355	0.84[EUR][1000 genomes]
rs2192363	0.85[ASN][1000 genomes]
rs2215810	0.85[ASN][1000 genomes]
rs28376639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2872704	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34028526	0.85[EUR][1000 genomes]
rs34351987	0.85[EUR][1000 genomes]
rs34352292	0.85[EUR][1000 genomes]
rs35866305	0.85[EUR][1000 genomes]
rs35971217	0.85[EUR][1000 genomes]
rs3797006	0.80[CEU][hapmap]
rs3822296	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4140932	0.86[ASN][1000 genomes]
rs59684117	0.85[EUR][1000 genomes]
rs61240629	0.85[EUR][1000 genomes]
rs62289285	0.85[EUR][1000 genomes]
rs6449138	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828721	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6855244	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71601473	0.84[EUR][1000 genomes]
rs7442554	0.84[EUR][1000 genomes]
rs7661287	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7681816	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687272	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690471	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7697778	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973629	0.85[ASN][1000 genomes]
rs9991652	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15378600-15401200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15384400-15402000	Weak transcription	Fetal Lung	lung
3	chr4:15388400-15401800	Weak transcription	Fetal Stomach	stomach
4	chr4:15394400-15401600	Weak transcription	HSMMtube	muscle
5	chr4:15394400-15402400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:15397000-15402200	Weak transcription	Right Atrium	heart
7	chr4:15398000-15401400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:15398000-15402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:15398200-15401800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:15399000-15402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:15399000-15402400	Enhancers	Hela-S3	cervix
12	chr4:15399000-15405200	Enhancers	Placenta Amnion	Placenta Amnion
13	chr4:15399200-15401200	Enhancers	HMEC	breast
14	chr4:15399200-15402400	Enhancers	NHEK	skin
15	chr4:15399600-15402200	Enhancers	Stomach Smooth Muscle	stomach
16	chr4:15399800-15401000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:15400000-15401000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:15400000-15401000	Enhancers	Esophagus	oesophagus
19	chr4:15400000-15402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:15400000-15402400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:15400000-15402800	Enhancers	Colon Smooth Muscle	Colon
22	chr4:15400000-15405400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:15400200-15401200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr4:15400200-15401400	Weak transcription	NHLF	lung
25	chr4:15400200-15402000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr4:15400200-15402000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:15400200-15402000	Weak transcription	NHDF-Ad	bronchial
28	chr4:15400200-15402200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr4:15400200-15402800	Enhancers	Primary T cells from cord blood	blood
30	chr4:15400200-15403200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:15400200-15403200	Enhancers	Ovary	ovary
32	chr4:15400200-15403400	Enhancers	Primary B cells from peripheral blood	blood
33	chr4:15400200-15405000	Enhancers	Primary hematopoietic stem cells	blood
34	chr4:15400400-15401400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:15400400-15401400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:15400400-15401600	Weak transcription	Osteobl	bone
37	chr4:15400400-15401800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:15400400-15402200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:15400400-15402600	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr4:15400400-15403600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr4:15400600-15401000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr4:15400600-15401400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr4:15400600-15401400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:15400600-15401600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:15400600-15402400	Weak transcription	Lung	lung
46	chr4:15400600-15403600	Enhancers	Fetal Kidney	kidney
47	chr4:15400800-15401800	Weak transcription	Adipose Nuclei	Adipose
48	chr4:15400800-15402000	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr4:15400800-15402000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:15400800-15402000	Weak transcription	Aorta	Aorta

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