Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1024758	0.86[CHD][hapmap]
rs11735738	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13110520	0.92[ASN][1000 genomes]
rs13114920	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13131227	0.81[CEU][hapmap]
rs13138481	0.81[CHD][hapmap]
rs2192356	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13116208	FAM200B	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15427000-15431400	Active TSS	Aorta	Aorta
2	chr4:15428600-15430800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:15428600-15430800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:15428600-15431400	Enhancers	Adipose Nuclei	Adipose
5	chr4:15428800-15430800	Enhancers	Fetal Stomach	stomach
6	chr4:15428800-15435400	Weak transcription	NHEK	skin
7	chr4:15429000-15430800	Enhancers	Brain Cingulate Gyrus	brain
8	chr4:15429200-15430800	Enhancers	Brain Substantia Nigra	brain
9	chr4:15429600-15430800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:15429600-15430800	Enhancers	Brain Germinal Matrix	brain
11	chr4:15429600-15430800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:15429800-15430800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:15429800-15435200	Weak transcription	Osteobl	bone
14	chr4:15430000-15430800	Enhancers	Ovary	ovary
15	chr4:15430000-15435000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:15430400-15431000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:15430400-15431200	Active TSS	Stomach Smooth Muscle	stomach
18	chr4:15430400-15431400	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:15430400-15435000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:15430600-15435000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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