Variant report

Variant	rs13114920
Chromosome Location	chr4:15435274-15435275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11735738	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13108125	0.83[EUR][1000 genomes]
rs13110520	0.92[ASN][1000 genomes]
rs13116208	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116402	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2192356	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4698109	0.83[EUR][1000 genomes]
rs9992835	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15428800-15435400	Weak transcription	NHEK	skin
2	chr4:15430800-15436200	Weak transcription	Brain Germinal Matrix	brain
3	chr4:15430800-15437000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:15430800-15437400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:15431400-15436200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:15431400-15437800	Weak transcription	Ovary	ovary
7	chr4:15431400-15443800	Weak transcription	Aorta	Aorta
8	chr4:15433400-15437600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:15433800-15437400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:15435000-15436400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:15435000-15436400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:15435000-15436600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:15435000-15436600	Enhancers	NHDF-Ad	bronchial
14	chr4:15435000-15436800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:15435000-15438000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:15435200-15435600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:15435200-15436600	Enhancers	Osteobl	bone
18	chr4:15435200-15438200	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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