Variant report

Variant	rs2192356
Chromosome Location	chr4:15424591-15424592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1024758	0.84[CHD][hapmap]
rs11735738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110520	0.89[ASN][1000 genomes]
rs13114920	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13116208	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13116402	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13131227	0.81[CEU][hapmap];0.80[GIH][hapmap];0.82[EUR][1000 genomes]
rs13138481	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2192356	FAM200B	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15416800-15429000	Weak transcription	Fetal Lung	lung
2	chr4:15419000-15428600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:15419800-15428600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr4:15420800-15428800	Weak transcription	Fetal Stomach	stomach
5	chr4:15422800-15425200	Weak transcription	HMEC	breast
6	chr4:15423000-15425400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:15423000-15428400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:15423200-15426000	Weak transcription	Ovary	ovary
9	chr4:15423200-15428400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:15423200-15428600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:15423200-15429000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:15423200-15429000	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:15423400-15424800	Weak transcription	Aorta	Aorta
14	chr4:15423400-15425200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:15423800-15426000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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