Variant report

Variant	rs10013360
Chromosome Location	chr4:91175600-91175601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91047274..91050081-chr4:91174126..91176725,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10015971	1.00[CEU][hapmap]
rs10016078	0.89[ASW][hapmap];0.81[AFR][1000 genomes]
rs10022446	0.81[AFR][1000 genomes]
rs10024732	1.00[CEU][hapmap]
rs11931183	1.00[CEU][hapmap]
rs11932216	1.00[CEU][hapmap]
rs11932221	1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs11933080	1.00[CEU][hapmap]
rs11936096	1.00[CEU][hapmap]
rs11940424	1.00[CEU][hapmap]
rs11943050	0.81[AFR][1000 genomes]
rs11943059	1.00[CEU][hapmap]
rs11945084	1.00[CEU][hapmap]
rs11946053	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs11946195	1.00[CEU][hapmap]
rs11947703	1.00[CEU][hapmap]
rs17016637	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17016638	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17016649	0.86[AMR][1000 genomes]
rs17016684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17016697	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17016707	0.88[CHD][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes]
rs17016709	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2035126	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2035127	1.00[CEU][hapmap]
rs28401445	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28870519	0.81[AFR][1000 genomes]
rs56822678	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57144592	0.83[AMR][1000 genomes]
rs58062591	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61444645	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6813228	1.00[CEU][hapmap]
rs6828014	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs6828199	1.00[CEU][hapmap]
rs6831098	1.00[CEU][hapmap]
rs6831305	1.00[CEU][hapmap]
rs6832140	1.00[CEU][hapmap]
rs6848616	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[AFR][1000 genomes]
rs6853618	1.00[CEU][hapmap]
rs6853854	1.00[CEU][hapmap]
rs6853970	1.00[CEU][hapmap]
rs6856093	1.00[CEU][hapmap]
rs72876157	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72876158	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72876165	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72876170	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72877708	0.81[ASN][1000 genomes]
rs72877729	0.81[AFR][1000 genomes]
rs72877730	0.81[AFR][1000 genomes]
rs72877785	0.81[AFR][1000 genomes]
rs72879750	0.83[AMR][1000 genomes]
rs72879759	0.83[AMR][1000 genomes]
rs7356145	1.00[CEU][hapmap]
rs73832731	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73832732	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73832737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7675868	1.00[CEU][hapmap]
rs7676068	1.00[CEU][hapmap]
rs7676688	1.00[CEU][hapmap]
rs7676938	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv830006	chr4:90971656-91186340	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1007804	chr4:91122398-91217331	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv594822	chr4:91130734-91194806	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879540	chr4:91156104-91212092	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv437924	chr4:91171790-91197792	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91175200-91176000	Enhancers	NHEK	skin
2	chr4:91175400-91175800	Enhancers	Pancreas	Pancrea
3	chr4:91175400-91176000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:91175400-91176000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:91175600-91176000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:91175600-91176000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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