Variant report

Variant	rs72877708
Chromosome Location	chr4:91157898-91157899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:91046902..91051153-chr4:91157807..91162298,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10013360	0.81[ASN][1000 genomes]
rs17016637	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17016638	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17016649	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17016684	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17016697	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17016707	0.92[AMR][1000 genomes]
rs17016709	0.88[AMR][1000 genomes]
rs56822678	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57144592	0.92[AMR][1000 genomes]
rs58062591	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58946277	0.91[AFR][1000 genomes]
rs61444645	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72874397	0.83[AFR][1000 genomes]
rs72876104	0.83[AFR][1000 genomes]
rs72876138	0.91[AFR][1000 genomes]
rs72876145	0.91[AFR][1000 genomes]
rs72876157	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72876158	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72876165	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72876170	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72877739	0.91[AFR][1000 genomes]
rs72879750	0.92[AMR][1000 genomes]
rs72879759	0.92[AMR][1000 genomes]
rs73832731	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73832732	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73832763	0.82[AMR][1000 genomes]
rs7681478	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879537	chr4:90883047-91165346	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv830006	chr4:90971656-91186340	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1007804	chr4:91122398-91217331	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv594822	chr4:91130734-91194806	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv879540	chr4:91156104-91212092	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91155000-91158800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:91156400-91160400	Weak transcription	Fetal Kidney	kidney

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