Variant report

Variant	rs73832763
Chromosome Location	chr4:91255452-91255453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516869	0.85[ASN][1000 genomes]
rs13129884	0.85[ASN][1000 genomes]
rs17016637	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016638	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016649	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016684	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016697	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016707	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016709	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17016808	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17016811	0.96[ASN][1000 genomes]
rs17016824	0.95[ASN][1000 genomes]
rs17016859	0.88[ASN][1000 genomes]
rs17016910	0.85[ASN][1000 genomes]
rs1841624	0.85[ASN][1000 genomes]
rs35252631	0.83[ASN][1000 genomes]
rs35718327	0.85[ASN][1000 genomes]
rs3822099	0.88[ASN][1000 genomes]
rs56822678	0.80[AMR][1000 genomes]
rs57144592	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58062591	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61444645	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876157	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876158	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876165	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876170	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877708	0.82[AMR][1000 genomes]
rs72879750	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72879759	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832731	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832732	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73832748	1.00[ASN][1000 genomes]
rs73832769	0.95[ASN][1000 genomes]
rs73832773	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91244600-91270200	Weak transcription	Pancreas	Pancrea
2	chr4:91250000-91256800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:91250600-91259200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:91253000-91257800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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