Variant report

Variant	rs72876145
Chromosome Location	chr4:91106386-91106387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:91079283..91080905-chr4:91104406..91107229,2	MCF-7	breast:
2	chr4:91047346..91051064-chr4:91103358..91108092,8	MCF-7	breast:
3	chr4:91047507..91050919-chr4:91101707..91107580,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184305	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58946277	1.00[AFR][1000 genomes]
rs72874386	0.84[AFR][1000 genomes]
rs72874397	0.91[AFR][1000 genomes]
rs72876104	0.91[AFR][1000 genomes]
rs72876138	1.00[AFR][1000 genomes]
rs72877708	0.91[AFR][1000 genomes]
rs72877739	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv879537	chr4:90883047-91165346	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv830006	chr4:90971656-91186340	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91103200-91108600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:91104400-91106800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:91104600-91106600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr4:91104600-91106600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:91104600-91107600	Enhancers	Fetal Heart	heart
6	chr4:91105400-91106400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:91105400-91107600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:91105600-91106400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:91105600-91106400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:91105600-91106400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:91105600-91106800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:91105600-91107000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:91105600-91108800	Enhancers	Brain Germinal Matrix	brain
14	chr4:91105800-91106400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:91105800-91106400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr4:91105800-91106400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:91105800-91106600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:91105800-91106600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr4:91105800-91106800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:91106200-91107200	Weak transcription	Stomach Mucosa	stomach
21	chr4:91106200-91107600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:91106200-91107800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:91106200-91108000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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