Variant report

Variant	rs10014743
Chromosome Location	chr4:175539207-175539208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10006199	0.84[AFR][1000 genomes]
rs13327923	1.00[AMR][1000 genomes]
rs2247242	1.00[CEU][hapmap]
rs28401186	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28540613	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6835990	1.00[CEU][hapmap]
rs9998240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880679	chr4:175502088-175552622	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv880497	chr4:175513812-175556222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175537000-175539400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:175538600-175539400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:175538600-175540200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:175538800-175539400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:175538800-175539400	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr4:175538800-175539600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:175538800-175539800	Enhancers	K562	blood
8	chr4:175538800-175540200	Enhancers	Duodenum Mucosa	Duodenum
9	chr4:175538800-175540200	Enhancers	Stomach Mucosa	stomach
10	chr4:175538800-175540400	Enhancers	Fetal Intestine Small	intestine
11	chr4:175538800-175540600	Enhancers	Fetal Intestine Large	intestine
12	chr4:175539000-175539600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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