Variant report

Variant	rs10015006
Chromosome Location	chr4:118810223-118810224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10014076	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12503729	0.98[EUR][1000 genomes]
rs12503813	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs4323174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856317	0.83[ASN][1000 genomes]
rs7661207	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9994872	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482390	chr4:118804378-118944823	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3389434	chr4:118809484-118810817	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
3	esv3360008	chr4:118809486-118810580	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	esv3406374	chr4:118809690-118810609	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	esv3490693	chr4:118809765-118810575	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv3490694	chr4:118809765-118810575	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3385611	chr4:118809802-118810606	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3323901	chr4:118809822-118811021	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118810200-118811200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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