Variant report

Variant	rs12503813
Chromosome Location	chr4:118784946-118784947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10014076	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10015006	0.83[ASN][1000 genomes]
rs4323174	0.83[ASN][1000 genomes]
rs6856317	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661207	0.92[ASN][1000 genomes]
rs7685408	0.80[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12503813	NDST3	cis	cerebellum	SCAN
rs12503813	SMO	trans	parietal	SCAN
rs12503813	SNORA24	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118784600-118785000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links