Variant report

Variant	rs10015787
Chromosome Location	chr4:101952750-101952751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10000451	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10000538	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358313	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28393983	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28488364	0.84[ASN][1000 genomes]
rs34422081	0.84[ASN][1000 genomes]
rs3789745	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3804350	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41498549	0.84[ASN][1000 genomes]
rs58656951	0.84[ASN][1000 genomes]
rs59659135	1.00[ASN][1000 genomes]
rs6850799	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851231	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7840	0.84[ASN][1000 genomes]
rs9684543	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
3	chr4:101940800-101958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:101941000-101960200	Weak transcription	Colonic Mucosa	Colon
5	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
6	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:101941600-101959400	Weak transcription	HepG2	liver
9	chr4:101941800-101953000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:101941800-101959200	Weak transcription	Left Ventricle	heart
11	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:101942200-101953000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:101942400-101960200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:101942600-101953200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:101942600-101966800	Weak transcription	Gastric	stomach
17	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:101942800-101953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:101942800-101959600	Weak transcription	Lung	lung
21	chr4:101943000-101952800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:101943000-101954000	Weak transcription	Brain Germinal Matrix	brain
23	chr4:101943000-101959000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr4:101943000-101961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:101943200-101953200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:101943200-101959200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
29	chr4:101943400-101952800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:101943400-101953200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr4:101943400-101959000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:101943400-101964200	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:101943400-101967200	Weak transcription	Fetal Brain Male	brain
34	chr4:101943600-101958800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr4:101943800-101958200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:101943800-101958800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:101943800-101960800	Weak transcription	Esophagus	oesophagus
38	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
39	chr4:101944000-101953000	Weak transcription	Aorta	Aorta
40	chr4:101944000-101954800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:101944000-101958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:101944000-101959000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr4:101944000-101962000	Weak transcription	A549	lung
44	chr4:101944000-101964600	Weak transcription	NHLF	lung
45	chr4:101944200-101953400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr4:101944400-101953000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:101944400-101953200	Weak transcription	Fetal Intestine Large	intestine
48	chr4:101944400-101959200	Weak transcription	NHDF-Ad	bronchial
49	chr4:101944400-101968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea

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