Variant report

Variant	rs1001590
Chromosome Location	chr14:24331699-24331700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11158416	0.82[ASN][1000 genomes]
rs11158417	0.82[ASN][1000 genomes]
rs11844118	0.82[ASN][1000 genomes]
rs11848301	0.82[ASN][1000 genomes]
rs12050347	0.82[ASN][1000 genomes]
rs1467587	0.82[ASN][1000 genomes]
rs1957682	0.93[ASN][1000 genomes]
rs2146571	0.82[ASN][1000 genomes]
rs2146572	0.80[ASN][1000 genomes]
rs2224685	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34544775	0.82[ASN][1000 genomes]
rs4421908	0.82[ASN][1000 genomes]
rs6573423	0.87[ASN][1000 genomes]
rs8014138	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043299	chr14:23766696-24351724	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
3	nsv564045	chr14:24224245-24348343	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24330000-24333600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:24331200-24332000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:24331200-24333600	Weak transcription	Left Ventricle	heart
4	chr14:24331400-24333800	Weak transcription	Fetal Heart	heart
5	chr14:24331400-24334000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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