Variant report

Variant	rs10016517
Chromosome Location	chr4:127360497-127360498
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55663226	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57116213	1.00[AMR][1000 genomes]
rs57575512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847999	1.00[AMR][1000 genomes]
rs73848001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526498	chr4:127347399-127362391	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127359800-127361000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:127359800-127361400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:127359800-127363000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:127359800-127363200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:127360000-127361000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:127360000-127362000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:127360000-127362800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:127360400-127360800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr4:127360400-127360800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:127360400-127361400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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