Variant report

Variant	rs55663226
Chromosome Location	chr4:127356865-127356866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10016517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57116213	1.00[AMR][1000 genomes]
rs57575512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73847999	1.00[AMR][1000 genomes]
rs73848001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526498	chr4:127347399-127362391	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv879906	chr4:127354073-127414252	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127346200-127388400	Weak transcription	K562	blood
2	chr4:127356400-127357200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:127356600-127357200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:127356600-127357200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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