Variant report

Variant	rs10017163
Chromosome Location	chr4:95770979-95770980
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95763140..95765026-chr4:95770756..95772869,2	MCF-7	breast:

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10003866	0.91[ASN][1000 genomes]
rs10003992	0.86[ASN][1000 genomes]
rs10004286	0.81[ASN][1000 genomes]
rs10004478	0.91[ASN][1000 genomes]
rs10004573	0.91[ASN][1000 genomes]
rs10005096	0.92[ASN][1000 genomes]
rs10005252	0.92[ASN][1000 genomes]
rs10005450	0.92[ASN][1000 genomes]
rs10008126	0.81[AMR][1000 genomes]
rs10010959	0.91[ASN][1000 genomes]
rs10014945	0.91[ASN][1000 genomes]
rs10015222	0.91[ASN][1000 genomes]
rs10017575	0.91[ASN][1000 genomes]
rs10027656	0.92[ASN][1000 genomes]
rs10033559	0.92[ASN][1000 genomes]
rs1003909	0.83[ASN][1000 genomes]
rs10212893	0.91[ASN][1000 genomes]
rs11097441	0.81[ASN][1000 genomes]
rs11097443	0.91[ASN][1000 genomes]
rs11097444	0.91[ASN][1000 genomes]
rs11097445	0.91[ASN][1000 genomes]
rs11934778	0.87[ASN][1000 genomes]
rs11946778	0.84[ASN][1000 genomes]
rs12500280	0.86[ASN][1000 genomes]
rs12500330	0.86[ASN][1000 genomes]
rs12503136	0.81[AMR][1000 genomes]
rs13103529	0.91[ASN][1000 genomes]
rs13117041	0.92[ASN][1000 genomes]
rs13117507	0.92[ASN][1000 genomes]
rs13120681	0.81[AMR][1000 genomes]
rs13127197	0.90[ASN][1000 genomes]
rs13127435	0.91[ASN][1000 genomes]
rs13127833	0.91[ASN][1000 genomes]
rs13127842	0.91[ASN][1000 genomes]
rs13127888	0.91[ASN][1000 genomes]
rs13139046	0.84[ASN][1000 genomes]
rs13149762	0.92[ASN][1000 genomes]
rs13150342	0.92[ASN][1000 genomes]
rs13151193	0.91[ASN][1000 genomes]
rs1319314	0.91[ASN][1000 genomes]
rs1319315	0.91[ASN][1000 genomes]
rs1319316	0.91[ASN][1000 genomes]
rs1544386	0.92[ASN][1000 genomes]
rs1544387	0.91[ASN][1000 genomes]
rs1544388	0.89[ASN][1000 genomes]
rs1544389	0.89[ASN][1000 genomes]
rs1544390	0.87[ASN][1000 genomes]
rs1544391	0.88[ASN][1000 genomes]
rs1544392	0.91[ASN][1000 genomes]
rs1544393	0.91[ASN][1000 genomes]
rs28501174	0.81[AMR][1000 genomes]
rs2865413	0.92[ASN][1000 genomes]
rs4077885	0.81[AMR][1000 genomes]
rs4254781	0.91[ASN][1000 genomes]
rs4256228	0.91[ASN][1000 genomes]
rs4361394	0.89[ASN][1000 genomes]
rs4364269	0.91[ASN][1000 genomes]
rs4429734	0.91[ASN][1000 genomes]
rs4437261	0.91[ASN][1000 genomes]
rs4533780	0.82[ASN][1000 genomes]
rs4538488	0.91[ASN][1000 genomes]
rs6532511	0.81[ASN][1000 genomes]
rs6532512	0.91[ASN][1000 genomes]
rs6812504	0.91[ASN][1000 genomes]
rs6816019	0.87[ASN][1000 genomes]
rs6816482	0.87[ASN][1000 genomes]
rs6817080	0.87[ASN][1000 genomes]
rs6817662	0.91[ASN][1000 genomes]
rs6828291	0.92[ASN][1000 genomes]
rs6828354	0.92[ASN][1000 genomes]
rs6828538	0.92[ASN][1000 genomes]
rs6828950	0.92[ASN][1000 genomes]
rs6829477	0.81[ASN][1000 genomes]
rs6831418	0.81[ASN][1000 genomes]
rs6834911	0.85[ASN][1000 genomes]
rs6835688	0.91[ASN][1000 genomes]
rs6843053	0.91[ASN][1000 genomes]
rs6847607	0.81[ASN][1000 genomes]
rs6848017	0.89[ASN][1000 genomes]
rs6851643	0.80[ASN][1000 genomes]
rs6851987	0.81[ASN][1000 genomes]
rs6854743	0.92[ASN][1000 genomes]
rs6857888	0.87[ASN][1000 genomes]
rs6858126	0.85[ASN][1000 genomes]
rs6858132	0.85[ASN][1000 genomes]
rs6858143	0.85[ASN][1000 genomes]
rs6858333	0.87[ASN][1000 genomes]
rs6858439	0.87[ASN][1000 genomes]
rs6858699	0.87[ASN][1000 genomes]
rs7654266	0.91[ASN][1000 genomes]
rs7663201	0.83[ASN][1000 genomes]
rs7663374	0.83[ASN][1000 genomes]
rs7676033	0.91[ASN][1000 genomes]
rs7691832	0.91[ASN][1000 genomes]
rs7692197	0.91[ASN][1000 genomes]
rs916876	0.91[ASN][1000 genomes]
rs916877	0.91[ASN][1000 genomes]
rs916878	0.91[ASN][1000 genomes]
rs9307148	0.89[ASN][1000 genomes]
rs978122	0.91[ASN][1000 genomes]
rs9992130	0.91[ASN][1000 genomes]
rs9995378	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95768800-95789600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95769000-95789600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95770200-95771200	Enhancers	Thymus	Thymus
4	chr4:95770200-95771400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:95770400-95771000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95770400-95771200	Enhancers	Fetal Thymus	thymus
7	chr4:95770400-95771200	Enhancers	Gastric	stomach
8	chr4:95770600-95771000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:95770600-95771400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr4:95770800-95772200	Enhancers	A549	lung

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