Variant report

Variant	rs11097441
Chromosome Location	chr4:95748285-95748286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10003866	0.95[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs10003992	0.85[ASN][1000 genomes]
rs10004286	1.00[ASN][1000 genomes]
rs10004478	0.90[ASN][1000 genomes]
rs10004573	0.96[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs10005096	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10005252	0.89[ASN][1000 genomes]
rs10005450	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10010959	0.95[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs10014945	0.94[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs10015222	0.95[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs10017163	0.81[ASN][1000 genomes]
rs10017575	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10027656	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10033559	0.89[ASN][1000 genomes]
rs1003909	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10212893	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11097443	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11097444	0.90[ASN][1000 genomes]
rs11097445	0.90[ASN][1000 genomes]
rs11934778	0.94[ASN][1000 genomes]
rs11946778	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs12500280	0.93[ASN][1000 genomes]
rs12500330	1.00[CHB][hapmap];0.96[JPT][hapmap];0.93[ASN][1000 genomes]
rs13103529	0.90[ASN][1000 genomes]
rs13117041	0.89[ASN][1000 genomes]
rs13117507	0.91[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs13127197	0.96[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs13127435	0.93[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13127833	0.96[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs13127842	0.90[ASN][1000 genomes]
rs13127888	0.90[ASN][1000 genomes]
rs13139046	1.00[CHB][hapmap];0.96[JPT][hapmap];0.97[ASN][1000 genomes]
rs13149762	0.89[ASN][1000 genomes]
rs13150342	0.95[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs13151193	0.95[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs1319314	0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs1319315	0.87[ASN][1000 genomes]
rs1319316	0.87[ASN][1000 genomes]
rs1544386	0.89[ASN][1000 genomes]
rs1544387	0.89[ASN][1000 genomes]
rs1544388	0.86[ASN][1000 genomes]
rs1544389	0.86[ASN][1000 genomes]
rs1544390	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1544391	0.85[ASN][1000 genomes]
rs1544392	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1544393	0.87[ASN][1000 genomes]
rs2107031	0.82[CHB][hapmap];0.96[JPT][hapmap]
rs2865375	0.83[CHB][hapmap]
rs2865413	0.89[ASN][1000 genomes]
rs4254781	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4256228	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4282183	0.82[CHB][hapmap];0.96[JPT][hapmap]
rs4361394	0.86[ASN][1000 genomes]
rs4364269	0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs4429734	0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs4437261	0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs4538488	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6532511	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532512	0.96[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6812504	0.90[ASN][1000 genomes]
rs6816019	1.00[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs6816482	1.00[CHB][hapmap];0.96[JPT][hapmap];0.94[ASN][1000 genomes]
rs6817080	0.94[ASN][1000 genomes]
rs6817662	0.90[ASN][1000 genomes]
rs6828291	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828354	0.91[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs6828538	0.89[ASN][1000 genomes]
rs6828821	0.87[ASN][1000 genomes]
rs6828950	0.89[ASN][1000 genomes]
rs6829477	0.87[ASN][1000 genomes]
rs6831418	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs6834911	0.92[ASN][1000 genomes]
rs6835688	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6843053	0.96[CHB][hapmap];0.96[JPT][hapmap];0.90[ASN][1000 genomes]
rs6847607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848017	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6851643	0.87[ASN][1000 genomes]
rs6851987	0.89[ASN][1000 genomes]
rs6854743	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6857888	0.94[ASN][1000 genomes]
rs6858126	0.92[ASN][1000 genomes]
rs6858132	0.92[ASN][1000 genomes]
rs6858143	1.00[CHB][hapmap];0.96[JPT][hapmap];0.92[ASN][1000 genomes]
rs6858333	0.94[ASN][1000 genomes]
rs6858439	0.94[ASN][1000 genomes]
rs6858699	0.94[ASN][1000 genomes]
rs7654266	0.87[ASN][1000 genomes]
rs7663201	1.00[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663374	0.98[ASN][1000 genomes]
rs7676033	0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs7691832	0.90[ASN][1000 genomes]
rs7692197	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs916876	0.91[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs916877	0.87[ASN][1000 genomes]
rs916878	0.87[ASN][1000 genomes]
rs9307148	0.95[CHB][hapmap];0.96[JPT][hapmap];0.89[ASN][1000 genomes]
rs978122	0.87[ASN][1000 genomes]
rs9992130	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9995378	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95741600-95748800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:95746600-95748400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:95747200-95748600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:95747200-95749000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:95747200-95749200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:95747400-95748400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:95747400-95748600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:95747400-95748800	Enhancers	HUVEC	blood vessel
9	chr4:95747400-95749200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:95747400-95749800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:95747400-95749800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:95747400-95751000	Enhancers	NHEK	skin
13	chr4:95747600-95748600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:95747600-95748600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:95747600-95748600	Enhancers	HMEC	breast
16	chr4:95747800-95748600	Enhancers	A549	lung
17	chr4:95747800-95749000	Enhancers	Dnd41	blood
18	chr4:95748000-95748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:95748000-95748600	Enhancers	NH-A	brain
20	chr4:95748000-95749400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:95748200-95748400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:95748200-95750800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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