Variant report

Variant	rs2865375
Chromosome Location	chr4:95731394-95731395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10000023	0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10003866	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10003992	0.91[AMR][1000 genomes]
rs10004286	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10004478	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10004573	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10005096	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10005252	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10005450	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10008126	0.83[CHB][hapmap]
rs10010959	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10014945	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10015222	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10017575	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10027656	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10033559	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1003910	0.83[CHB][hapmap]
rs10212893	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11097441	0.83[CHB][hapmap]
rs11097443	1.00[CEU][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11097444	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11097445	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11730377	0.81[CHB][hapmap]
rs11934778	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11946778	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12500280	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12500330	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12503136	0.83[CHB][hapmap]
rs13103529	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13117041	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13117507	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13120681	0.83[CHB][hapmap]
rs13127197	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13127833	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13127842	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13127888	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13139046	0.84[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13149762	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13150342	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13151193	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1319314	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1319315	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1319316	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1544386	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1544387	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1544388	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1544389	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1544390	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1544391	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1544393	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17022328	0.83[CHB][hapmap]
rs2107031	0.89[CEU][hapmap]
rs2865413	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34715090	0.80[AMR][1000 genomes]
rs4077885	0.83[CHB][hapmap]
rs4254781	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4256228	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4282183	0.89[CEU][hapmap];0.85[YRI][hapmap]
rs4361394	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4364269	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4429734	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4437261	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4490463	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4533780	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4538488	1.00[CEU][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532511	0.84[CHB][hapmap]
rs6532512	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532515	0.89[CEU][hapmap]
rs6812504	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6816019	0.89[CEU][hapmap];0.83[CHB][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6816482	0.88[CEU][hapmap];0.84[CHB][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6817080	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6817662	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6828354	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6828538	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6828821	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6828950	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6829477	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6831418	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6834911	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6835688	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6841103	0.81[AMR][1000 genomes]
rs6843053	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6847607	0.84[CHB][hapmap]
rs6848017	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6851643	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6851987	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6854743	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6857888	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6858126	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6858132	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6858143	0.84[CHB][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6858333	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6858439	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6858699	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7654266	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7663201	0.84[CHB][hapmap]
rs7663374	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7668820	0.83[CHB][hapmap]
rs7676033	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7678784	0.89[CEU][hapmap]
rs7691832	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7692197	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7692640	0.83[CHB][hapmap]
rs916876	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs916877	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs916878	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9307148	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs978122	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9992130	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9995378	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95710400-95732400	Weak transcription	Aorta	Aorta
2	chr4:95723000-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:95723600-95733600	Weak transcription	Ovary	ovary
4	chr4:95727800-95732200	Weak transcription	A549	lung
5	chr4:95728000-95738200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95730800-95732600	Enhancers	Fetal Heart	heart
7	chr4:95731000-95732000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:95731200-95732800	Weak transcription	Stomach Mucosa	stomach
9	chr4:95731200-95747200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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