Variant report

Variant	rs7678784
Chromosome Location	chr4:95803113-95803114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10003866	0.89[CEU][hapmap]
rs10004478	0.84[CEU][hapmap]
rs10004573	0.89[CEU][hapmap]
rs10005096	0.89[CEU][hapmap];0.81[MEX][hapmap]
rs10005252	0.88[CEU][hapmap]
rs10005450	0.89[CEU][hapmap];0.81[MEX][hapmap]
rs10010959	0.89[CEU][hapmap]
rs10014945	0.89[CEU][hapmap]
rs10015222	0.89[CEU][hapmap]
rs10017575	0.89[CEU][hapmap]
rs10027656	0.89[CEU][hapmap];0.81[MEX][hapmap]
rs10212893	0.89[CEU][hapmap]
rs11097443	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs11097445	0.88[CEU][hapmap]
rs11946778	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[YRI][hapmap]
rs12500330	0.86[CEU][hapmap]
rs13117507	0.89[CEU][hapmap]
rs13127197	0.89[CEU][hapmap]
rs13127833	0.89[CEU][hapmap]
rs13150342	0.88[CEU][hapmap]
rs13151193	0.88[CEU][hapmap]
rs1319314	0.89[CEU][hapmap]
rs1541369	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1544390	0.89[CEU][hapmap]
rs2023835	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2107031	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2865375	0.89[CEU][hapmap]
rs2865410	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3775029	0.85[CEU][hapmap];0.81[MEX][hapmap]
rs4254781	0.89[CEU][hapmap];0.81[MEX][hapmap]
rs4256228	0.89[CEU][hapmap];0.81[MEX][hapmap]
rs4282183	0.92[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4364269	0.89[CEU][hapmap]
rs4429734	0.89[CEU][hapmap]
rs4437261	0.89[CEU][hapmap]
rs4533780	0.83[EUR][1000 genomes]
rs4538488	0.89[CEU][hapmap];0.86[MEX][hapmap];0.82[YRI][hapmap]
rs6532512	0.89[CEU][hapmap]
rs6532515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6828354	0.89[CEU][hapmap]
rs6831418	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[YRI][hapmap]
rs6835688	0.89[CEU][hapmap]
rs6843053	0.87[CEU][hapmap]
rs6846271	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6848017	0.89[CEU][hapmap]
rs6854743	0.88[CEU][hapmap]
rs6857732	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7676033	0.85[CEU][hapmap]
rs7692197	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs916876	0.89[CEU][hapmap]
rs9307148	0.89[CEU][hapmap]
rs9992130	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
2	chr4:95793400-95810600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:95800000-95803400	Weak transcription	A549	lung
4	chr4:95800000-95810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:95801600-95803200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:95802600-95805400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95803000-95804000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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