Variant report

Variant	rs6857732
Chromosome Location	chr4:95786388-95786389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95785938..95787441-chr4:95791928..95794895,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10003866	0.86[EUR][1000 genomes]
rs10004286	0.84[EUR][1000 genomes]
rs10004478	0.87[EUR][1000 genomes]
rs10004573	0.87[EUR][1000 genomes]
rs10005096	0.87[EUR][1000 genomes]
rs10005252	0.87[EUR][1000 genomes]
rs10005450	0.87[EUR][1000 genomes]
rs10010959	0.87[EUR][1000 genomes]
rs10014945	0.87[EUR][1000 genomes]
rs10015222	0.87[EUR][1000 genomes]
rs10017575	0.87[EUR][1000 genomes]
rs10027656	0.87[EUR][1000 genomes]
rs10033559	0.87[EUR][1000 genomes]
rs10212893	0.87[EUR][1000 genomes]
rs11097443	0.87[EUR][1000 genomes]
rs11097444	0.87[EUR][1000 genomes]
rs11097445	0.87[EUR][1000 genomes]
rs11934778	0.87[EUR][1000 genomes]
rs11946778	0.85[EUR][1000 genomes]
rs12500280	0.87[EUR][1000 genomes]
rs12500330	0.87[EUR][1000 genomes]
rs13103529	0.87[EUR][1000 genomes]
rs13117041	0.87[EUR][1000 genomes]
rs13117507	0.87[EUR][1000 genomes]
rs13127197	0.87[EUR][1000 genomes]
rs13127833	0.87[EUR][1000 genomes]
rs13127842	0.87[EUR][1000 genomes]
rs13127888	0.87[EUR][1000 genomes]
rs13139046	0.84[EUR][1000 genomes]
rs13149762	0.86[EUR][1000 genomes]
rs13150342	0.86[EUR][1000 genomes]
rs13151193	0.87[EUR][1000 genomes]
rs1319314	0.87[EUR][1000 genomes]
rs1319315	0.87[EUR][1000 genomes]
rs1319316	0.87[EUR][1000 genomes]
rs1541369	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1544386	0.87[EUR][1000 genomes]
rs1544387	0.85[EUR][1000 genomes]
rs1544388	0.85[EUR][1000 genomes]
rs1544389	0.85[EUR][1000 genomes]
rs1544390	0.82[EUR][1000 genomes]
rs1544391	0.83[EUR][1000 genomes]
rs1544393	0.86[EUR][1000 genomes]
rs2023835	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2107031	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2522530	0.82[AFR][1000 genomes]
rs2865410	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2865413	0.87[EUR][1000 genomes]
rs4254781	0.87[EUR][1000 genomes]
rs4256228	0.87[EUR][1000 genomes]
rs4282183	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4361394	0.87[EUR][1000 genomes]
rs4364269	0.87[EUR][1000 genomes]
rs4429734	0.87[EUR][1000 genomes]
rs4437261	0.87[EUR][1000 genomes]
rs4533780	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4538488	0.87[EUR][1000 genomes]
rs6532512	0.87[EUR][1000 genomes]
rs6532515	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6812504	0.87[EUR][1000 genomes]
rs6816019	0.87[EUR][1000 genomes]
rs6816482	0.87[EUR][1000 genomes]
rs6817080	0.87[EUR][1000 genomes]
rs6817662	0.87[EUR][1000 genomes]
rs6828354	0.87[EUR][1000 genomes]
rs6828538	0.87[EUR][1000 genomes]
rs6828821	0.83[EUR][1000 genomes]
rs6828950	0.87[EUR][1000 genomes]
rs6829477	0.87[EUR][1000 genomes]
rs6831418	0.83[EUR][1000 genomes]
rs6834911	0.85[EUR][1000 genomes]
rs6835688	0.87[EUR][1000 genomes]
rs6841103	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6843053	0.87[EUR][1000 genomes]
rs6846271	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6848017	0.85[EUR][1000 genomes]
rs6854743	0.87[EUR][1000 genomes]
rs6857888	0.87[EUR][1000 genomes]
rs6858126	0.85[EUR][1000 genomes]
rs6858132	0.84[EUR][1000 genomes]
rs6858143	0.85[EUR][1000 genomes]
rs6858333	0.86[EUR][1000 genomes]
rs6858439	0.84[EUR][1000 genomes]
rs6858699	0.85[EUR][1000 genomes]
rs7654266	0.87[EUR][1000 genomes]
rs7663374	0.84[EUR][1000 genomes]
rs7676033	0.86[EUR][1000 genomes]
rs7678784	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7691832	0.87[EUR][1000 genomes]
rs7692197	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs916876	0.86[EUR][1000 genomes]
rs916877	0.87[EUR][1000 genomes]
rs916878	0.87[EUR][1000 genomes]
rs9307148	0.87[EUR][1000 genomes]
rs978122	0.87[EUR][1000 genomes]
rs9992130	0.87[EUR][1000 genomes]
rs9995378	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95768800-95789600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95769000-95789600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95781200-95791400	Weak transcription	A549	lung
4	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney

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