Variant report

Variant	rs10017222
Chromosome Location	chr4:15623418-15623419
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15621417..15624141-chr4:15629634..15631169,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10005305	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10008878	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10009089	0.81[ASN][1000 genomes]
rs10015827	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025875	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10034315	0.81[ASN][1000 genomes]
rs10433813	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516289	1.00[CHB][hapmap]
rs11722300	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11722757	0.81[ASN][1000 genomes]
rs11722854	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11723478	0.81[ASN][1000 genomes]
rs11723554	1.00[CHB][hapmap]
rs11729955	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.80[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11730088	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11732953	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735063	1.00[CHB][hapmap]
rs11947383	0.80[CEU][hapmap]
rs12650529	0.81[ASN][1000 genomes]
rs13134177	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17405811	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17476642	1.00[CHB][hapmap]
rs1786	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs28394730	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28604503	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34955342	0.81[ASN][1000 genomes]
rs35013326	0.81[ASN][1000 genomes]
rs3756247	1.00[CHB][hapmap]
rs3775956	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775957	0.81[ASN][1000 genomes]
rs4301111	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs4331772	0.81[ASN][1000 genomes]
rs4346644	0.81[ASN][1000 genomes]
rs4396986	1.00[CHB][hapmap]
rs4423870	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4549375	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs4554069	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4600905	0.81[ASN][1000 genomes]
rs6414764	1.00[CHB][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs6449152	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815254	1.00[CHB][hapmap]
rs6815296	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];0.81[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6824422	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6826058	1.00[CHB][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs6827406	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828776	0.81[ASN][1000 genomes]
rs6839654	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs6848779	0.88[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6852735	0.81[ASN][1000 genomes]
rs6857442	0.81[ASN][1000 genomes]
rs7434484	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9994518	0.88[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3376437	chr4:15613963-15626944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3464784	chr4:15613969-15626901	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464785	chr4:15613969-15626901	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15568400-15655600	Weak transcription	Gastric	stomach
2	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
4	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
5	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
7	chr4:15603000-15624400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:15603800-15626800	Weak transcription	NHLF	lung
9	chr4:15605400-15625800	Weak transcription	HMEC	breast
10	chr4:15605600-15624400	Weak transcription	K562	blood
11	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
12	chr4:15606000-15633800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:15612800-15625200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:15613400-15625800	Weak transcription	NH-A	brain
15	chr4:15613400-15626200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:15613400-15635000	Weak transcription	HSMMtube	muscle
17	chr4:15613600-15626000	Weak transcription	Placenta	Placenta
18	chr4:15615600-15625000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:15617800-15623800	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr4:15617800-15624400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:15617800-15624600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:15617800-15627400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:15618000-15624600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:15618400-15623600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr4:15618600-15625800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:15618600-15626000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:15618600-15627000	Weak transcription	Right Ventricle	heart
28	chr4:15618600-15651000	Weak transcription	Spleen	Spleen
29	chr4:15620200-15624400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:15620400-15623800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
31	chr4:15620400-15624600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr4:15620600-15623600	ZNF genes & repeats	Primary B cells from cord blood	blood
33	chr4:15620600-15623800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr4:15620600-15624800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
35	chr4:15620800-15623800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
36	chr4:15620800-15624200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr4:15620800-15626800	Weak transcription	Lung	lung
38	chr4:15621000-15624800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:15621000-15624800	ZNF genes & repeats	Dnd41	blood
40	chr4:15621000-15632600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:15621200-15623600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr4:15621200-15623800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:15621200-15624600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
44	chr4:15621200-15625200	ZNF genes & repeats	GM12878-XiMat	blood
45	chr4:15621400-15623600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
46	chr4:15621600-15625800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:15621600-15625800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:15621600-15625800	Weak transcription	Osteobl	bone
49	chr4:15621600-15627000	Weak transcription	Brain Angular Gyrus	brain
50	chr4:15621800-15624400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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