Variant report

Variant	rs4331772
Chromosome Location	chr4:15615856-15615857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10005305	0.87[AFR][1000 genomes]
rs10008878	0.89[AFR][1000 genomes]
rs10009089	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015827	0.81[ASN][1000 genomes]
rs10017222	0.81[ASN][1000 genomes]
rs10025875	0.90[AFR][1000 genomes]
rs10034315	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10433813	0.81[ASN][1000 genomes]
rs11722757	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723478	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726647	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11732953	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12642407	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650529	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13134177	0.97[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13150957	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1786	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28394730	0.91[AFR][1000 genomes]
rs28402170	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28447067	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28644177	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28820655	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34473224	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34559117	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34955342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013326	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35120298	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3756247	0.98[ASN][1000 genomes]
rs3775956	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3775957	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4257653	0.96[ASN][1000 genomes]
rs4301111	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4346644	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4396986	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4423870	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484296	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4549375	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4554069	0.91[AFR][1000 genomes]
rs4600905	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698116	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6414764	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449152	0.81[ASN][1000 genomes]
rs6815254	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6816982	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6823775	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824422	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825051	0.80[AFR][1000 genomes]
rs6826058	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827406	0.81[ASN][1000 genomes]
rs6828776	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839654	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6843740	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6848779	0.89[AFR][1000 genomes]
rs6852735	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857442	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667175	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7698596	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9994518	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3376437	chr4:15613963-15626944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3464784	chr4:15613969-15626901	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464785	chr4:15613969-15626901	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15537400-15621000	Weak transcription	Hela-S3	cervix
2	chr4:15550000-15617800	Weak transcription	Thymus	Thymus
3	chr4:15565400-15621400	Weak transcription	Esophagus	oesophagus
4	chr4:15568400-15655600	Weak transcription	Gastric	stomach
5	chr4:15575200-15618000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:15589800-15621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:15593800-15621200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:15594600-15617800	Weak transcription	Right Ventricle	heart
10	chr4:15596600-15616400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:15597200-15620600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:15600600-15620800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
14	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
15	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:15602200-15621200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
18	chr4:15603000-15624400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:15603800-15626800	Weak transcription	NHLF	lung
20	chr4:15604200-15617800	Weak transcription	Spleen	Spleen
21	chr4:15604800-15617800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:15605400-15625800	Weak transcription	HMEC	breast
23	chr4:15605600-15620400	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:15605600-15624400	Weak transcription	K562	blood
25	chr4:15605800-15618400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:15605800-15621000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
28	chr4:15606000-15621600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:15606000-15633800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:15606400-15618000	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:15606800-15620600	Weak transcription	Adipose Nuclei	Adipose
32	chr4:15607000-15620800	Weak transcription	A549	lung
33	chr4:15607200-15617800	Weak transcription	GM12878-XiMat	blood
34	chr4:15607200-15621200	Weak transcription	HUVEC	blood vessel
35	chr4:15607400-15620800	Weak transcription	HepG2	liver
36	chr4:15607400-15621200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:15607600-15621000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr4:15608400-15616000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:15608400-15616200	Strong transcription	Dnd41	blood
40	chr4:15608800-15617800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:15610000-15621400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr4:15610400-15619600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:15610600-15618000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr4:15610600-15620400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:15612000-15623200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr4:15612400-15616400	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr4:15612600-15616400	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr4:15612800-15625200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:15613200-15616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr4:15613200-15617800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links