Variant report

Variant	rs6843740
Chromosome Location	chr4:15699057-15699058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15694240..15696950-chr4:15697578..15699264,2	K562	blood:
2	chr4:15697208..15699857-chr4:15706552..15708335,2	MCF-7	breast:
3	chr4:15697378..15700153-chr4:15707474..15709331,2	K562	blood:

Variant related genes	Relation type
ENSG00000109743	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10005305	0.96[AFR][1000 genomes]
rs10008878	0.94[AFR][1000 genomes]
rs10009089	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10025875	0.95[AFR][1000 genomes]
rs10034315	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11722757	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11722854	0.81[ASN][1000 genomes]
rs11723478	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11726647	0.91[ASN][1000 genomes]
rs11732953	0.90[AFR][1000 genomes]
rs12642407	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650529	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13134177	0.89[AFR][1000 genomes]
rs13150957	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1786	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28394730	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs28402170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28447067	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28604503	0.81[ASN][1000 genomes]
rs28644177	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28820655	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34473224	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34559117	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34955342	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35013326	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35120298	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3756247	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775956	0.96[AFR][1000 genomes]
rs3775957	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4257653	0.98[ASN][1000 genomes]
rs4301111	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331772	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4346644	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4396986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423870	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4484296	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4549375	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4554069	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4600905	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4698116	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6414764	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6815254	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823775	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6824422	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6825051	0.81[AFR][1000 genomes]
rs6826058	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6828776	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6839654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6848779	0.97[AFR][1000 genomes]
rs6852735	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6857442	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7434484	0.81[ASN][1000 genomes]
rs7667175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994518	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15684000-15704400	Weak transcription	Left Ventricle	heart
2	chr4:15684800-15704400	Weak transcription	Aorta	Aorta
3	chr4:15686600-15704400	Weak transcription	Thymus	Thymus
4	chr4:15687200-15701200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:15688400-15703800	Weak transcription	Fetal Kidney	kidney
6	chr4:15691400-15704000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:15691400-15704200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:15692200-15704000	Weak transcription	Brain Germinal Matrix	brain
9	chr4:15693200-15701600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:15693400-15702800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:15693600-15701800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:15694800-15703800	Weak transcription	Brain Substantia Nigra	brain
13	chr4:15695400-15699400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr4:15697600-15704000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:15697600-15704000	Weak transcription	HUVEC	blood vessel
16	chr4:15697600-15704200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:15697600-15704400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:15697600-15723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:15697800-15701600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:15697800-15704000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:15697800-15704000	Weak transcription	Osteobl	bone
22	chr4:15698000-15703600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr4:15698000-15703800	Weak transcription	NHDF-Ad	bronchial
24	chr4:15698000-15704000	Weak transcription	NH-A	brain
25	chr4:15698200-15699200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr4:15698400-15699200	Enhancers	Liver	Liver
27	chr4:15698600-15699200	ZNF genes & repeats	A549	lung
28	chr4:15698600-15699200	Enhancers	Dnd41	blood
29	chr4:15698800-15699400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr4:15698800-15703800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:15699000-15699200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
32	chr4:15699000-15699200	Enhancers	Primary B cells from cord blood	blood
33	chr4:15699000-15703800	Weak transcription	Primary T cells from cord blood	blood

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