Variant report

Variant	rs10021313
Chromosome Location	chr4:76957243-76957244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1140834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12508110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12509255	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13130621	1.00[MEX][hapmap]
rs4859410	1.00[MEX][hapmap]
rs4859564	1.00[MEX][hapmap]
rs7694386	1.00[MEX][hapmap]
rs9998204	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv19222	chr4:76948569-76977780	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1802071	chr4:76948817-76972594	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1815228	chr4:76955027-76959624	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3342501	chr4:76955662-76957510	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76955800-76958000	Weak transcription	Right Atrium	heart
2	chr4:76956000-76957400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:76956200-76957600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:76956800-76958400	Enhancers	HUVEC	blood vessel
5	chr4:76957000-76957400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:76957000-76957600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:76957000-76957600	Enhancers	Duodenum Mucosa	Duodenum
8	chr4:76957000-76958200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:76957000-76958400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:76957000-76958400	Enhancers	Pancreas	Pancrea
11	chr4:76957000-76958400	Enhancers	HMEC	breast
12	chr4:76957200-76958200	Enhancers	NHEK	skin
13	chr4:76957200-76958400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:76957200-76958400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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