Variant report

Variant	rs4859564
Chromosome Location	chr4:76804067-76804068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10007472	1.00[CHD][hapmap]
rs10021313	1.00[MEX][hapmap]
rs1021923	0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021924	0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856862	1.00[ASN][1000 genomes]
rs11934786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116352	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130621	0.83[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13149236	1.00[ASN][1000 genomes]
rs1546567	1.00[ASN][1000 genomes]
rs1546568	1.00[ASN][1000 genomes]
rs1566975	1.00[GIH][hapmap]
rs17000961	1.00[ASN][1000 genomes]
rs17000973	1.00[ASN][1000 genomes]
rs17001036	1.00[ASN][1000 genomes]
rs1847731	1.00[CHD][hapmap]
rs1972062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976517	1.00[GIH][hapmap]
rs1983110	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047976	1.00[CHD][hapmap]
rs2174513	1.00[ASN][1000 genomes]
rs2174514	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2174515	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406977	1.00[ASN][1000 genomes]
rs34155925	1.00[ASN][1000 genomes]
rs381067	1.00[MEX][hapmap]
rs3817099	1.00[CHD][hapmap]
rs4241572	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241573	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241574	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4241575	1.00[GIH][hapmap]
rs4288032	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324568	1.00[ASN][1000 genomes]
rs4484327	0.80[AMR][1000 genomes]
rs4490489	1.00[ASN][1000 genomes]
rs4859410	0.89[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859563	1.00[ASN][1000 genomes]
rs5015809	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024633	1.00[ASN][1000 genomes]
rs57659593	1.00[ASN][1000 genomes]
rs60044896	1.00[ASN][1000 genomes]
rs61288563	1.00[ASN][1000 genomes]
rs6531992	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs6811934	1.00[ASN][1000 genomes]
rs6824610	1.00[ASN][1000 genomes]
rs6826893	1.00[ASN][1000 genomes]
rs6838414	1.00[ASN][1000 genomes]
rs6856987	1.00[ASN][1000 genomes]
rs73825563	1.00[ASN][1000 genomes]
rs73825569	1.00[ASN][1000 genomes]
rs73825570	1.00[ASN][1000 genomes]
rs7654738	1.00[ASN][1000 genomes]
rs7668152	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668165	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7669428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685485	1.00[ASN][1000 genomes]
rs7685710	1.00[ASN][1000 genomes]
rs7691712	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7694386	0.89[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998204	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76794400-76807000	Weak transcription	Right Atrium	heart
2	chr4:76797600-76807000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:76799600-76807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:76799600-76807000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:76799600-76807000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:76799800-76807000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:76799800-76807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:76799800-76807000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:76803400-76807000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links