Variant report

Variant	rs28406977
Chromosome Location	chr4:76771611-76771612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76741166..76744063-chr4:76769113..76771616,2	MCF-7	breast:
2	chr4:76575506..76578468-chr4:76770062..76772274,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1021923	1.00[ASN][1000 genomes]
rs1021924	1.00[ASN][1000 genomes]
rs10856862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934786	1.00[ASN][1000 genomes]
rs11935735	1.00[ASN][1000 genomes]
rs13116352	1.00[ASN][1000 genomes]
rs13149236	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000707	1.00[EUR][1000 genomes]
rs17000735	1.00[EUR][1000 genomes]
rs17000764	1.00[EUR][1000 genomes]
rs17000810	1.00[EUR][1000 genomes]
rs17000961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001150	1.00[EUR][1000 genomes]
rs17001165	1.00[EUR][1000 genomes]
rs1972062	1.00[ASN][1000 genomes]
rs1972063	1.00[ASN][1000 genomes]
rs1983110	1.00[ASN][1000 genomes]
rs2174513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174514	1.00[ASN][1000 genomes]
rs2174515	1.00[ASN][1000 genomes]
rs34155925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241572	1.00[ASN][1000 genomes]
rs4241573	1.00[ASN][1000 genomes]
rs4288032	1.00[ASN][1000 genomes]
rs4324568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4490489	1.00[ASN][1000 genomes]
rs4859410	1.00[ASN][1000 genomes]
rs4859563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859564	1.00[ASN][1000 genomes]
rs5015809	1.00[ASN][1000 genomes]
rs5028031	1.00[EUR][1000 genomes]
rs56024633	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57659593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60044896	1.00[ASN][1000 genomes]
rs61288563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844961	1.00[EUR][1000 genomes]
rs6856987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668152	1.00[ASN][1000 genomes]
rs7668165	1.00[ASN][1000 genomes]
rs7669428	1.00[ASN][1000 genomes]
rs7685485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693116	1.00[EUR][1000 genomes]
rs7694386	1.00[ASN][1000 genomes]
rs9998204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv964255	chr4:76761215-76773429	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76763400-76773600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:76769400-76772000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:76769400-76773800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:76769600-76771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:76769600-76772200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:76769800-76772000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:76770800-76772000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:76771000-76772000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:76771000-76772200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:76771000-76775000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:76771200-76772600	Weak transcription	H1 Cell Line	embryonic stem cell

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