Variant report

Variant	rs73825563
Chromosome Location	chr4:76763129-76763130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1021923	1.00[ASN][1000 genomes]
rs1021924	1.00[ASN][1000 genomes]
rs10856862	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934786	1.00[ASN][1000 genomes]
rs11935735	1.00[ASN][1000 genomes]
rs13116352	1.00[ASN][1000 genomes]
rs13149236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000707	1.00[EUR][1000 genomes]
rs17000735	1.00[EUR][1000 genomes]
rs17000764	1.00[EUR][1000 genomes]
rs17000810	1.00[EUR][1000 genomes]
rs17000961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17000973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001150	1.00[EUR][1000 genomes]
rs17001165	1.00[EUR][1000 genomes]
rs1972062	1.00[ASN][1000 genomes]
rs1972063	1.00[ASN][1000 genomes]
rs1983110	1.00[ASN][1000 genomes]
rs2174513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174514	1.00[ASN][1000 genomes]
rs2174515	1.00[ASN][1000 genomes]
rs28406977	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34155925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241572	1.00[ASN][1000 genomes]
rs4241573	1.00[ASN][1000 genomes]
rs4288032	1.00[ASN][1000 genomes]
rs4324568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4490489	1.00[ASN][1000 genomes]
rs4859410	1.00[ASN][1000 genomes]
rs4859563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859564	1.00[ASN][1000 genomes]
rs5015809	1.00[ASN][1000 genomes]
rs5028031	1.00[EUR][1000 genomes]
rs56024633	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57659593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60044896	1.00[ASN][1000 genomes]
rs61288563	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6811934	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838414	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844961	1.00[EUR][1000 genomes]
rs6856987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825569	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73825570	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654738	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668152	1.00[ASN][1000 genomes]
rs7668165	1.00[ASN][1000 genomes]
rs7669428	1.00[ASN][1000 genomes]
rs7685485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685710	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693116	1.00[EUR][1000 genomes]
rs7694386	1.00[ASN][1000 genomes]
rs9998204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv964255	chr4:76761215-76773429	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76736600-76763200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:76743800-76764800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:76756400-76764800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:76761000-76763200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:76762400-76763200	Enhancers	Left Ventricle	heart
6	chr4:76762400-76763400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:76762600-76763200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:76762600-76763200	Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr4:76762600-76763200	Enhancers	Right Atrium	heart
10	chr4:76762600-76763400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:76762600-76763400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:76762600-76763400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:76762600-76763400	Enhancers	Brain Substantia Nigra	brain
14	chr4:76762600-76763400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr4:76762600-76763600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:76762600-76763600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr4:76762600-76763600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:76762600-76763600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:76762600-76763600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:76762600-76763600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:76762600-76763600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr4:76762600-76763600	Flanking Active TSS	A549	lung
23	chr4:76762600-76763800	Enhancers	HSMMtube	muscle
24	chr4:76762800-76763200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr4:76762800-76763200	Enhancers	Brain Anterior Caudate	brain
26	chr4:76762800-76763200	Enhancers	NH-A	brain
27	chr4:76762800-76763400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr4:76762800-76763400	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:76762800-76763400	Enhancers	Brain Cingulate Gyrus	brain
30	chr4:76762800-76763400	Enhancers	Brain Hippocampus Middle	brain
31	chr4:76762800-76763400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:76762800-76763400	Flanking Active TSS	Fetal Heart	heart
33	chr4:76762800-76763400	Enhancers	Placenta	Placenta
34	chr4:76762800-76763400	Flanking Active TSS	HepG2	liver
35	chr4:76762800-76763400	Flanking Active TSS	K562	blood
36	chr4:76762800-76763600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:76762800-76763600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr4:76762800-76763600	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr4:76762800-76763600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr4:76763000-76763200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:76763000-76763400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:76763000-76763400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr4:76763000-76763400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr4:76763000-76763400	Enhancers	Stomach Mucosa	stomach

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