Variant report

Variant	rs7669428
Chromosome Location	chr4:76800056-76800057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1021923	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021924	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856862	1.00[ASN][1000 genomes]
rs11934786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116352	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130621	1.00[EUR][1000 genomes]
rs13149236	1.00[ASN][1000 genomes]
rs1546567	1.00[ASN][1000 genomes]
rs1546568	1.00[ASN][1000 genomes]
rs17000961	1.00[ASN][1000 genomes]
rs17000973	1.00[ASN][1000 genomes]
rs17001036	1.00[ASN][1000 genomes]
rs1972062	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983110	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174513	1.00[ASN][1000 genomes]
rs2174514	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2174515	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28406977	1.00[ASN][1000 genomes]
rs34155925	1.00[ASN][1000 genomes]
rs4241572	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241573	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241574	1.00[EUR][1000 genomes]
rs4288032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4324568	1.00[ASN][1000 genomes]
rs4490489	1.00[ASN][1000 genomes]
rs4859410	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859563	1.00[ASN][1000 genomes]
rs4859564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5015809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56024633	1.00[ASN][1000 genomes]
rs57659593	1.00[ASN][1000 genomes]
rs60044896	1.00[ASN][1000 genomes]
rs61288563	1.00[ASN][1000 genomes]
rs6531992	1.00[ASN][1000 genomes]
rs6811934	1.00[ASN][1000 genomes]
rs6824610	1.00[ASN][1000 genomes]
rs6826893	1.00[ASN][1000 genomes]
rs6838414	1.00[ASN][1000 genomes]
rs6856987	1.00[ASN][1000 genomes]
rs73825563	1.00[ASN][1000 genomes]
rs73825569	1.00[ASN][1000 genomes]
rs73825570	1.00[ASN][1000 genomes]
rs7654738	1.00[ASN][1000 genomes]
rs7668152	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668165	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7685485	1.00[ASN][1000 genomes]
rs7685710	1.00[ASN][1000 genomes]
rs7691712	1.00[EUR][1000 genomes]
rs7694386	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998204	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76794400-76807000	Weak transcription	Right Atrium	heart
2	chr4:76797600-76807000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:76798600-76800200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:76799000-76800200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:76799200-76800200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:76799600-76807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:76799600-76807000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:76799600-76807000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:76799800-76807000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:76799800-76807000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:76799800-76807000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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