Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10007472	1.00[CHD][hapmap]
rs11724044	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124155	0.85[ASN][1000 genomes]
rs13130621	1.00[CHD][hapmap]
rs13132709	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13139405	0.85[ASN][1000 genomes]
rs1847731	1.00[CHD][hapmap]
rs1876095	0.83[MEX][hapmap];0.86[TSI][hapmap]
rs2047981	0.87[ASN][1000 genomes]
rs3817099	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241574	1.00[CHD][hapmap]
rs4418002	1.00[ASN][1000 genomes]
rs4532262	0.82[ASN][1000 genomes]
rs4859410	1.00[CHD][hapmap]
rs4859564	1.00[CHD][hapmap]
rs56027301	1.00[ASN][1000 genomes]
rs62321575	0.85[ASN][1000 genomes]
rs6531992	1.00[CHD][hapmap]
rs6811965	0.85[ASN][1000 genomes]
rs6812314	0.85[ASN][1000 genomes]
rs6815705	0.85[ASN][1000 genomes]
rs6816705	1.00[ASN][1000 genomes]
rs6831235	0.85[ASN][1000 genomes]
rs7691712	1.00[CHD][hapmap]
rs7694386	1.00[CHD][hapmap]
rs9784511	0.83[MEX][hapmap];0.82[TSI][hapmap]
rs9998204	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2047976	CXCL1	cis	parietal	SCAN
rs2047976	CXCL6	cis	cerebellum	SCAN
rs2047976	CXCL10	cis	lymphoblastoid	seeQTL
rs2047976	IL8	cis	cerebellum	SCAN
rs2047976	NAAA	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76782600-76789600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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