Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76817728..76820650-chr4:76859225..76861936,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138744	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10007472	1.00[CHB][hapmap]
rs11721508	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11724044	0.84[EUR][1000 genomes]
rs11731367	0.82[JPT][hapmap]
rs11934638	0.82[JPT][hapmap]
rs12054638	0.91[EUR][1000 genomes]
rs13115160	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13116688	1.00[CHB][hapmap]
rs13120456	0.82[JPT][hapmap]
rs13124155	0.81[EUR][1000 genomes]
rs13132709	0.83[EUR][1000 genomes]
rs13147538	1.00[CHB][hapmap]
rs1394918	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001163	1.00[CHB][hapmap]
rs17221100	0.82[JPT][hapmap]
rs17287042	0.82[JPT][hapmap]
rs1847731	1.00[CHB][hapmap]
rs2047976	0.83[MEX][hapmap];0.86[TSI][hapmap]
rs3817099	1.00[CHB][hapmap];0.88[TSI][hapmap]
rs4241576	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4288029	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4629475	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6819442	1.00[CHD][hapmap]
rs9784511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1876095	NAAA	cis	Whole Blood	GTEx
rs1876095	CXCL6	cis	cerebellum	SCAN
rs1876095	IL8	cis	cerebellum	SCAN
rs1876095	CXCL1	cis	parietal	SCAN
rs1876095	CXCL11	cis	cerebellum	SCAN
rs1876095	SLC6A20	trans	multi-tissue	Pritchard
rs1876095	ASAHL	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: