Variant report
| Variant | rs13116688 |
|---|---|
| Chromosome Location | chr4:76812673-76812674 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:76808245..76810776-chr4:76812181..76813832,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10007472 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13147538 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
| rs17001163 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1847731 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1876095 | 1.00[CHB][hapmap] |
| rs28406986 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28436183 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28453978 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35011483 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35334463 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3817099 | 1.00[CHB][hapmap] |
| rs9784511 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3353539 | chr4:76530136-76993859 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv529613 | chr4:76654941-77081576 | Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv1004627 | chr4:76793910-76999584 | Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
