Variant report
| Variant | rs6811965 |
|---|---|
| Chromosome Location | chr4:76780087-76780088 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10007472 | 1.00[CHB][hapmap] |
| rs1013588 | 0.83[EUR][1000 genomes] |
| rs11724044 | 0.85[ASN][1000 genomes] |
| rs11932991 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13116688 | 1.00[CHB][hapmap] |
| rs13124155 | 1.00[ASN][1000 genomes] |
| rs13132709 | 1.00[ASN][1000 genomes] |
| rs13139405 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13147538 | 1.00[CHB][hapmap] |
| rs17001163 | 1.00[CHB][hapmap] |
| rs1847731 | 1.00[CHB][hapmap] |
| rs1876095 | 1.00[CHB][hapmap] |
| rs2047976 | 0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs2047981 | 0.86[EUR][1000 genomes] |
| rs3817099 | 1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs4418002 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4532262 | 0.83[EUR][1000 genomes] |
| rs56027301 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62321575 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6812314 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6815705 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6816705 | 0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6831235 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9784511 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3353539 | chr4:76530136-76993859 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv529613 | chr4:76654941-77081576 | Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6811965 | IL8 | cis | cerebellum | SCAN |
| rs6811965 | COL28A1 | trans | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:76780000-76780200 | Enhancers | Placenta | Placenta |
