Variant report

Variant	rs10021753
Chromosome Location	chr4:160218973-160218974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160218393..160220242-chr4:160225741..160228262,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10010980	1.00[AMR][1000 genomes]
rs10020558	1.00[AMR][1000 genomes]
rs11723634	0.82[YRI][hapmap]
rs13147632	1.00[YRI][hapmap]
rs28409785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28755457	1.00[AMR][1000 genomes]
rs28883584	1.00[AMR][1000 genomes]
rs6816396	0.82[YRI][hapmap]
rs72969781	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160186800-160225400	Weak transcription	Primary B cells from cord blood	blood
2	chr4:160189400-160235200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:160193400-160240200	Weak transcription	Gastric	stomach
4	chr4:160194400-160235600	Weak transcription	Fetal Stomach	stomach
5	chr4:160194400-160236600	Weak transcription	Primary T cells from cord blood	blood
6	chr4:160195200-160225600	Weak transcription	Placenta	Placenta
7	chr4:160200600-160235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:160205400-160219000	Weak transcription	Fetal Intestine Small	intestine
9	chr4:160205800-160236400	Weak transcription	Pancreas	Pancrea
10	chr4:160205800-160260600	Weak transcription	Aorta	Aorta
11	chr4:160206200-160229000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:160210000-160229200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:160210600-160225400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:160210600-160238000	Weak transcription	Adipose Nuclei	Adipose
15	chr4:160210800-160226000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:160211800-160219600	Weak transcription	HSMM	muscle
17	chr4:160212200-160219600	Weak transcription	HSMMtube	muscle
18	chr4:160213600-160219600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:160213600-160219800	Weak transcription	Right Atrium	heart
20	chr4:160214800-160220400	Enhancers	NHLF	lung
21	chr4:160215200-160236800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:160215400-160225600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr4:160215600-160225800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:160216000-160219800	Weak transcription	Esophagus	oesophagus
25	chr4:160216200-160219600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:160216200-160219600	Enhancers	NHDF-Ad	bronchial
27	chr4:160216200-160225800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:160216400-160219400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:160216600-160219200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:160216600-160219600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:160216600-160219600	Enhancers	Osteobl	bone
32	chr4:160216600-160237600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:160216800-160219000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:160216800-160219000	Enhancers	NHEK	skin
35	chr4:160216800-160219400	Enhancers	HMEC	breast
36	chr4:160216800-160219600	Weak transcription	Fetal Lung	lung
37	chr4:160216800-160219600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:160217000-160219400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:160217000-160219400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:160217000-160219600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:160217000-160219600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr4:160217000-160225800	Weak transcription	Left Ventricle	heart
43	chr4:160217000-160226000	Weak transcription	Small Intestine	intestine
44	chr4:160217000-160259400	Weak transcription	Fetal Brain Male	brain
45	chr4:160217200-160220000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:160217400-160229200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:160217600-160219600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:160217600-160219800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:160217600-160220200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr4:160217600-160220400	Enhancers	Brain Hippocampus Middle	brain

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