Variant report

Variant	rs28883584
Chromosome Location	chr4:160177973-160177974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160175364..160178262-chr4:160184928..160186720,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10010980	1.00[AMR][1000 genomes]
rs10020558	1.00[AMR][1000 genomes]
rs10021753	1.00[AMR][1000 genomes]
rs10034409	1.00[EUR][1000 genomes]
rs2464794	1.00[EUR][1000 genomes]
rs28409785	1.00[AMR][1000 genomes]
rs28755457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2952610	1.00[EUR][1000 genomes]
rs57147050	1.00[EUR][1000 genomes]
rs57299850	1.00[EUR][1000 genomes]
rs57659423	1.00[EUR][1000 genomes]
rs57696778	1.00[EUR][1000 genomes]
rs60646338	1.00[EUR][1000 genomes]
rs61498926	1.00[EUR][1000 genomes]
rs72965979	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72967707	1.00[EUR][1000 genomes]
rs72967709	1.00[EUR][1000 genomes]
rs72967714	1.00[EUR][1000 genomes]
rs72967717	1.00[EUR][1000 genomes]
rs72967780	1.00[EUR][1000 genomes]
rs72967798	1.00[EUR][1000 genomes]
rs7664778	1.00[EUR][1000 genomes]
rs7679267	1.00[EUR][1000 genomes]
rs7691182	1.00[EUR][1000 genomes]
rs9685433	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160149400-160216800	Weak transcription	Small Intestine	intestine
2	chr4:160160600-160179800	Weak transcription	NHEK	skin
3	chr4:160164400-160178000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:160167400-160186400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:160169800-160187800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:160170000-160187200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:160170200-160188000	Weak transcription	Fetal Kidney	kidney
8	chr4:160170400-160180000	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:160170400-160183200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:160170400-160186400	Weak transcription	Fetal Brain Male	brain
11	chr4:160170400-160188000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:160170400-160188400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:160170400-160192800	Weak transcription	Primary T cells from cord blood	blood
14	chr4:160170600-160180000	Weak transcription	Brain Angular Gyrus	brain
15	chr4:160170600-160183200	Weak transcription	NHDF-Ad	bronchial
16	chr4:160170600-160188000	Weak transcription	Osteobl	bone
17	chr4:160170600-160188200	Weak transcription	Psoas Muscle	Psoas
18	chr4:160171200-160183200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:160172200-160178400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:160172600-160182800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:160172600-160182800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:160172600-160188200	Weak transcription	Pancreas	Pancrea
23	chr4:160172600-160193000	Weak transcription	Gastric	stomach
24	chr4:160173000-160193200	Weak transcription	Thymus	Thymus
25	chr4:160173200-160179800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:160173200-160183400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:160173200-160187800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:160173200-160188200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr4:160173200-160188600	Weak transcription	Lung	lung
30	chr4:160173200-160192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:160173200-160217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:160173400-160188000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:160173400-160188000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr4:160173400-160188000	Weak transcription	Fetal Stomach	stomach
35	chr4:160173400-160188000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:160173400-160188200	Weak transcription	Right Ventricle	heart
37	chr4:160173400-160188400	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:160173400-160188400	Weak transcription	GM12878-XiMat	blood
39	chr4:160173400-160188400	Weak transcription	HSMM	muscle
40	chr4:160173400-160192600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:160173400-160194000	Weak transcription	Fetal Intestine Large	intestine
42	chr4:160173400-160194800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:160173600-160179000	Weak transcription	Liver	Liver
44	chr4:160173600-160181200	Weak transcription	Left Ventricle	heart
45	chr4:160173600-160188400	Weak transcription	Fetal Intestine Small	intestine
46	chr4:160173800-160180400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr4:160174000-160203400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:160174200-160179800	Weak transcription	Brain Substantia Nigra	brain
49	chr4:160174400-160181600	Weak transcription	Fetal Lung	lung
50	chr4:160174400-160182800	Weak transcription	HUVEC	blood vessel

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